KEGG   PATHWAY: ddq00040
Entry
ddq00040                    Pathway                                
Name
Pentose and glucuronate interconversions - Dickeya dianthicola
Class
Metabolism; Carbohydrate metabolism
Pathway map
ddq00040  Pentose and glucuronate interconversions
ddq00040

Module
ddq_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ddq00040]
ddq_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ddq00040]
Organism
Dickeya dianthicola [GN:ddq]
Gene
DDI_3021  Pectinesterase [KO:K01051] [EC:3.1.1.11]
DDI_1567  Pectinesterase precursor [KO:K01051] [EC:3.1.1.11]
DDI_3897  Pectate lyase B precursor [KO:K01728] [EC:4.2.2.2]
DDI_3898  Pectate lyase B precursor [KO:K01728] [EC:4.2.2.2]
DDI_3017  hypothetical protein [KO:K01728] [EC:4.2.2.2]
DDI_3019  Pectate lyase precursor [KO:K01728] [EC:4.2.2.2]
DDI_2102  Exopolygalacturonate lyase [KO:K01731] [EC:4.2.2.9]
DDI_4246  Exopolygalacturonate lyase [KO:K22994] [EC:4.2.2.9]
DDI_2126  Oligogalacturonate lyase [KO:K01730] [EC:4.2.2.6]
DDI_2097  Pectin degradation protein KdgF [KO:K26933] [EC:4.2.99.25]
DDI_2099  4-deoxy-L-threo-5-hexosulose-uronat ketol-isomerase [KO:K01815] [EC:5.3.1.17]
DDI_2100  5-keto-D-gluconate 5-reductase [KO:K00065] [EC:1.1.1.127]
DDI_0933  Polygalacturonase [KO:K01184] [EC:3.2.1.15]
DDI_0356  Uronate isomerase [KO:K01812] [EC:5.3.1.12]
DDI_0357  Altronate oxidoreductase [KO:K00041] [EC:1.1.1.58]
DDI_0358  Altronate dehydratase [KO:K01685] [EC:4.2.1.7]
DDI_4157  Mannonate dehydratase [KO:K01686] [EC:4.2.1.8]
DDI_2838  Starvation sensing protein RspA [KO:K08323] [EC:4.2.1.8]
DDI_0558  D-mannonate oxidoreductase [KO:K00040] [EC:1.1.1.57]
DDI_2839  Starvation sensing protein RspB [KO:K08322] [EC:1.1.1.380]
DDI_1127  UDP-glucose dehydrogenase [KO:K00012] [EC:1.1.1.22]
DDI_1128  UTP--glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
DDI_1886  UTP--glucose-1-phosphate uridylyltransferase [KO:K00963] [EC:2.7.7.9]
DDI_2368  L-ribulose-5-phosphate 4-epimerase [KO:K03077] [EC:5.1.3.4]
DDI_3906  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
DDI_1943  L-arabinose isomerase [KO:K01804] [EC:5.3.1.4]
DDI_1944  Ribulokinase [KO:K00853] [EC:2.7.1.16]
DDI_4376  Xylulose kinase [KO:K00854] [EC:2.7.1.17]
DDI_4378  Xylose isomerase [KO:K01805] [EC:5.3.1.5]
DDI_0114  Rhamnulokinase [KO:K00848] [EC:2.7.1.5]
DDI_0117  Rhamnulose-1-phosphate aldolase [KO:K01629] [EC:4.1.2.19]
Compound
C00022  Pyruvate
C00026  2-Oxoglutarate
C00029  UDP-glucose
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00116  Glycerol
C00167  UDP-glucuronate
C00181  D-Xylose
C00191  D-Glucuronate
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00216  D-Arabinose
C00231  D-Xylulose 5-phosphate
C00259  L-Arabinose
C00266  Glycolaldehyde
C00309  D-Ribulose
C00310  D-Xylulose
C00312  L-Xylulose
C00333  D-Galacturonate
C00379  Xylitol
C00433  2,5-Dioxopentanoate
C00470  Pectate
C00474  Ribitol
C00476  D-Lyxose
C00502  D-Xylonate
C00508  L-Ribulose
C00514  D-Mannonate
C00532  L-Arabitol
C00558  D-Tagaturonate
C00618  3-Dehydro-L-gulonate
C00714  Pectin
C00789  CDP-ribitol
C00800  L-Gulonate
C00817  D-Altronate
C00905  D-Fructuronate
C01068  D-Ribitol 5-phosphate
C01101  L-Ribulose 5-phosphate
C01508  L-Lyxose
C01904  D-Arabitol
C02266  D-Xylonolactone
C02273  Digalacturonate
C02426  L-Glyceraldehyde
C02753  D-Xylono-1,4-lactone
C03033  beta-D-Glucuronoside
C03291  L-Xylulose 5-phosphate
C03826  2-Dehydro-3-deoxy-D-xylonate
C04053  5-Dehydro-4-deoxy-D-glucuronate
C04349  (4S)-4,6-Dihydroxy-2,5-dioxohexanoate
C04575  (4R,5S)-4,5,6-Trihydroxy-2,3-dioxohexanoate
C05385  D-Glucuronate 1-phosphate
C05411  L-Xylonate
C05412  L-Lyxonate
C06118  4-(4-Deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate
C06441  L-Xylulose 1-phosphate
C14899  3-Dehydro-L-gulonate 6-phosphate
C15930  L-Galactonate
C20680  2-Dehydro-3-deoxy-L-galactonate
C22337  D-Ribulose 1-phosphate
C22712  4-Deoxy-L-threo-hex-4-enopyranuronate
Reference
PMID:11741871
  Authors
Yew WS, Gerlt JA.
  Title
Utilization of L-ascorbate by Escherichia coli K-12: assignments of functions to products of the yjf-sga and yia-sgb operons.
  Journal
J Bacteriol 184:302-6 (2002)
DOI:10.1128/JB.184.1.302-306.2002
Reference
PMID:15697206
  Authors
Yew WS, Akana J, Wise EL, Rayment I, Gerlt JA
  Title
Evolution of enzymatic activities in the orotidine 5'-monophosphate decarboxylase suprafamily: enhancing the promiscuous D-arabino-hex-3-ulose 6-phosphate synthase reaction catalyzed by 3-keto-L-gulonate 6-phosphate decarboxylase.
  Journal
Biochemistry 44:1807-15 (2005)
DOI:10.1021/bi047815v
Reference
PMID:10572115
  Authors
Yasueda H, Kawahara Y, Sugimoto S.
  Title
Bacillus subtilis yckG and yckF encode two key enzymes of the ribulose monophosphate pathway used by methylotrophs, and yckH is required for their expression.
  Journal
J Bacteriol 181:7154-60 (1999)
DOI:10.1128/JB.181.23.7154-7160.1999
Reference
PMID:10913097
  Authors
Ibanez E, Gimenez R, Pedraza T, Baldoma L, Aguilar J, Badia J
  Title
Role of the yiaR and yiaS genes of Escherichia coli in metabolism of endogenously formed L-xylulose.
  Journal
J Bacteriol 182:4625-7 (2000)
DOI:10.1128/JB.182.16.4625-4627.2000
Reference
PMID:15901685
  Authors
Orita I, Yurimoto H, Hirai R, Kawarabayasi Y, Sakai Y, Kato N
  Title
The archaeon Pyrococcus horikoshii possesses a bifunctional enzyme for formaldehyde fixation via the ribulose monophosphate pathway.
  Journal
J Bacteriol 187:3636-42 (2005)
DOI:10.1128/JB.187.11.3636-3642.2005
Related
pathway
ddq00010  Glycolysis / Gluconeogenesis
ddq00020  Citrate cycle (TCA cycle)
ddq00030  Pentose phosphate pathway
ddq00052  Galactose metabolism
ddq00053  Ascorbate and aldarate metabolism
ddq00500  Starch and sucrose metabolism
ddq00520  Amino sugar and nucleotide sugar metabolism
ddq00561  Glycerolipid metabolism
ddq00562  Inositol phosphate metabolism
ddq00740  Riboflavin metabolism
KO pathway
ko00040   
LinkDB

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