KEGG   PATHWAY: deq00030
Entry
deq00030                    Pathway                                
Name
Pentose phosphate pathway - Devosia sp. H5989
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
deq00030  Pentose phosphate pathway
deq00030

Module
deq_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:deq00030]
deq_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:deq00030]
deq_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:deq00030]
deq_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:deq00030]
deq_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:deq00030]
deq_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:deq00030]
Other DBs
GO: 0006098
Organism
Devosia sp. H5989 [GN:deq]
Gene
XM25_06840  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
XM25_19405  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
XM25_19400  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
XM25_09965  6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
XM25_10060  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
XM25_03260  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
XM25_14320  Transketolase [KO:K00615] [EC:2.2.1.1]
XM25_00460  Transaldolase [KO:K00616] [EC:2.2.1.2]
XM25_03030  Ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
XM25_08535  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
XM25_19250  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
XM25_20130  hypothetical protein [KO:K00852] [EC:2.7.1.15]
XM25_19235  Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
XM25_11470  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
XM25_20510  hypothetical protein [KO:K05774] [EC:2.7.4.23]
XM25_12285  phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
XM25_19395  Phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
XM25_14800  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
XM25_05220  short-chain dehydrogenase [KO:K00034] [EC:1.1.1.47]
XM25_00225  glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
XM25_14920  Gluconolactonase [KO:K01053] [EC:3.1.1.17]
XM25_09975  hypothetical protein [KO:K00851] [EC:2.7.1.12]
XM25_22275  2-dehydro-3-deoxygluconate kinase [KO:K00874] [EC:2.7.1.45]
XM25_21320  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
XM25_14340  Fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
XM25_08595  Fructose-bisphosphate aldolase class I [KO:K11645] [EC:4.1.2.13]
XM25_03240  Fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
XM25_03225  fructose 1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
XM25_05765  glpX; Fructose-1,6-bisphosphatase, GlpX type [KO:K11532] [EC:3.1.3.11 3.1.3.37]
XM25_08590  hypothetical protein [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
deq00010  Glycolysis / Gluconeogenesis
deq00040  Pentose and glucuronate interconversions
deq00052  Galactose metabolism
deq00230  Purine metabolism
deq00240  Pyrimidine metabolism
deq00340  Histidine metabolism
deq00630  Glyoxylate and dicarboxylate metabolism
deq00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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