KEGG   PATHWAY: ecoa00020
Entry
ecoa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli APEC O78 (APEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecoa00020  Citrate cycle (TCA cycle)
ecoa00020

Module
ecoa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecoa00020]
ecoa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecoa00020]
ecoa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecoa00020]
ecoa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecoa00020]
ecoa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecoa00020]
Other DBs
GO: 0006099
Organism
Escherichia coli APEC O78 (APEC) [GN:ecoa]
Gene
APECO78_07125  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
APECO78_07350  hydratase [KO:K01681] [EC:4.2.1.3]
APECO78_10250  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
APECO78_04030  aconitate hydratase AcnB [KO:K01682] [EC:4.2.1.3 4.2.1.99]
APECO78_09640  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
APECO78_07155  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
APECO78_07160  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
APECO78_04020  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
APECO78_07170  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
APECO78_07165  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
APECO78_07140  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
APECO78_07145  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
APECO78_07130  succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
APECO78_07135  succinate dehydrogenase hydrophobic subunit [KO:K00242]
APECO78_01725  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
APECO78_01720  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
APECO78_01715  fumarate reductase subunit C [KO:K00246]
APECO78_01710  fumarate reductase subunit D [KO:K00247]
APECO78_01540  fumarate hydratase FumB [KO:K01676] [EC:4.2.1.2]
APECO78_11865  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
APECO78_11860  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
APECO78_12190  hypothetical protein [KO:K01675] [EC:4.2.1.2]
APECO78_18385  DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
APECO78_19995  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
APECO78_14885  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
APECO78_20805  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
APECO78_04010  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
APECO78_04015  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
APECO78_10620  hypothetical protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecoa00010  Glycolysis / Gluconeogenesis
ecoa00053  Ascorbate and aldarate metabolism
ecoa00061  Fatty acid biosynthesis
ecoa00071  Fatty acid degradation
ecoa00190  Oxidative phosphorylation
ecoa00220  Arginine biosynthesis
ecoa00250  Alanine, aspartate and glutamate metabolism
ecoa00280  Valine, leucine and isoleucine degradation
ecoa00350  Tyrosine metabolism
ecoa00470  D-Amino acid metabolism
ecoa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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