KEGG   PATHWAY: enf00020
Entry
enf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter sp. FY-07
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
enf00020  Citrate cycle (TCA cycle)
enf00020

Module
enf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:enf00020]
enf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:enf00020]
enf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:enf00020]
enf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:enf00020]
enf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:enf00020]
Other DBs
GO: 0006099
Organism
Enterobacter sp. FY-07 [GN:enf]
Gene
AKI40_2176  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
AKI40_3315  Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AKI40_4162  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AKI40_2659  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AKI40_2181  sucA; Oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
AKI40_2182  Dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AKI40_4164  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AKI40_2184  Succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AKI40_2183  sucC; Succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AKI40_2179  sdhA; Succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AKI40_2180  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AKI40_4544  Fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
AKI40_4545  Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
AKI40_4546  frdC; Fumarate reductase subunit C [KO:K00246]
AKI40_4547  frdD; Fumarate reductase subunit D [KO:K00247]
AKI40_2900  Aerobic class I fumarate hydratase/fumarase A [KO:K01676] [EC:4.2.1.2]
AKI40_3459  Tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit [KO:K01676] [EC:4.2.1.2]
AKI40_2901  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AKI40_2748  cytoplasmic protein [KO:K01675] [EC:4.2.1.2]
AKI40_0551  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AKI40_1621  Malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
AKI40_3451  mqo; Malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
AKI40_0399  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AKI40_4166  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AKI40_4165  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase c [KO:K00627] [EC:2.3.1.12]
AKI40_3047  Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
AKI40_3274  Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
enf00010  Glycolysis / Gluconeogenesis
enf00053  Ascorbate and aldarate metabolism
enf00061  Fatty acid biosynthesis
enf00071  Fatty acid degradation
enf00190  Oxidative phosphorylation
enf00220  Arginine biosynthesis
enf00250  Alanine, aspartate and glutamate metabolism
enf00280  Valine, leucine and isoleucine degradation
enf00350  Tyrosine metabolism
enf00470  D-Amino acid metabolism
enf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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