KEGG   PATHWAY: enf00030
Entry
enf00030                    Pathway                                
Name
Pentose phosphate pathway - Enterobacter sp. FY-07
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
enf00030  Pentose phosphate pathway
enf00030

Module
enf_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:enf00030]
enf_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:enf00030]
enf_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:enf00030]
enf_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:enf00030]
enf_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:enf00030]
enf_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:enf00030]
enf_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:enf00030]
Other DBs
GO: 0006098
Organism
Enterobacter sp. FY-07 [GN:enf]
Gene
AKI40_4682  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
AKI40_3569  Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AKI40_2213  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
AKI40_4458  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
AKI40_1765  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AKI40_0415  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
AKI40_0825  tktA; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
AKI40_1411  Transketolase 2 [KO:K00615] [EC:2.2.1.1]
AKI40_1973  Transketolase subunit B [KO:K00615] [EC:2.2.1.1]
AKI40_1974  transketolase section [KO:K00615] [EC:2.2.1.1]
AKI40_3668  transketolase [KO:K00615] [EC:2.2.1.1]
AKI40_3669  hypothetical protein [KO:K00615] [EC:2.2.1.1]
AKI40_1560  transketolase section [KO:K00615] [EC:2.2.1.1]
AKI40_1561  transketolase section [KO:K00615] [EC:2.2.1.1]
AKI40_1412  transaldolase A [KO:K00616] [EC:2.2.1.2]
AKI40_4259  tal2; transaldolase B [KO:K00616] [EC:2.2.1.2]
AKI40_0833  Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
AKI40_4288  2-deoxyribose-5-phosphate aldolase, NAD-linked [KO:K01619] [EC:4.1.2.4]
AKI40_4931  Ribokinase RbsK [KO:K00852] [EC:2.7.1.15]
AKI40_0026  Ribokinase family sugar kinase [KO:K00852] [EC:2.7.1.15]
AKI40_4286  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
AKI40_2159  Phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
AKI40_4585  phnN; Phosphonate metabolism protein/1,5-bisphosphokinase PhnN [KO:K05774] [EC:2.7.4.23]
AKI40_3389  Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
AKI40_0437  Phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
AKI40_3568  edd; Phosphogluconate dehydratase, putative [KO:K01690] [EC:4.2.1.12]
AKI40_3567  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AKI40_4156  gcd; Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
AKI40_0109  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
AKI40_0178  tkrA; Glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AKI40_0372  gntK; Gluconate kinase 2 [KO:K00851] [EC:2.7.1.12]
AKI40_0180  Sugar kinase, ribokinase family [KO:K00874] [EC:2.7.1.45]
AKI40_0215  Sugar kinase, ribokinase family [KO:K00874] [EC:2.7.1.45]
AKI40_1706  Fructose-bisphosphate aldolase class 1 [KO:K11645] [EC:4.1.2.13]
AKI40_0828  fbaA; Fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
AKI40_4595  Fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
AKI40_4472  Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
AKI40_4858  glpX; Fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
AKI40_4866  pfkA; 6-phosphofructokinase isozyme I [KO:K00850] [EC:2.7.1.11]
AKI40_2744  6-phosphofructokinase II [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
enf00010  Glycolysis / Gluconeogenesis
enf00040  Pentose and glucuronate interconversions
enf00052  Galactose metabolism
enf00230  Purine metabolism
enf00240  Pyrimidine metabolism
enf00340  Histidine metabolism
enf00630  Glyoxylate and dicarboxylate metabolism
enf00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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