KEGG   PATHWAY: fiy00630
Entry
fiy00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Candidatus Filomicrobium marinum Y
Class
Metabolism; Carbohydrate metabolism
Pathway map
fiy00630  Glyoxylate and dicarboxylate metabolism
fiy00630

Module
fiy_M00621  Glycine cleavage system [PATH:fiy00630]
fiy_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:fiy00630]
Other DBs
GO: 0046487 0043648
Organism
Candidatus Filomicrobium marinum Y [GN:fiy]
Gene
BN1229_v1_1182  acs; acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
BN1229_v1_1122  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BN1229_v1_2950  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BN1229_v1_1092  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BN1229_v1_1240  sucD; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit [KO:K08692] [EC:6.2.1.9]
BN1229_v1_1239  sucC; succinyl-CoA synthetase, beta subunit [KO:K14067] [EC:6.2.1.9]
BN1229_v1_3385  mtkA; Malate--CoA ligase subunit beta [KO:K14067] [EC:6.2.1.9]
BN1229_v1_1522  phbA; Acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase) [KO:K00626] [EC:2.3.1.9]
BN1229_v1_3033  fadI; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
BN1229_v1_1536  yqeF; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
BN1229_v1_1537  fabG; 3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
BN1229_v1_0141  (R)-specific enoyl-CoA hydratase (modular protein) [KO:K17865] [EC:4.2.1.55]
BN1229_v1_1372  ccr; Crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
BN1229_v1_2916  Methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
BN1229_v1_1370  meaA; Protein MeaA [KO:K14447] [EC:5.4.99.63]
BN1229_v1_1375  Acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
BN1229_v1_1106  MaoC family dehydratase [KO:K14449] [EC:4.2.1.148]
BN1229_v1_3242  HpcH/HpaI aldolase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
BN1229_v1_1238  mcl; Malyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
BN1229_v1_0478  Carbamoyl-phosphate synthase L chain ATP-binding protein [KO:K01965] [EC:6.4.1.3]
BN1229_v1_0472  pccB; Propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3 2.1.3.15]
BN1229_v1_2395  yliK; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
BN1229_v1_2396  mutA; Methylmalonyl-CoA mutase small subunit [KO:K01847] [EC:5.4.99.2]
BN1229_v1_0178  glcD; glycolate oxidase subunit, FAD-linked [KO:K00104] [EC:1.1.99.14]
BN1229_v1_0179  FAD-linked oxidase [KO:K11472] [EC:1.1.99.14]
BN1229_v1_0180  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BN1229_v1_2331  katA; Catalase [KO:K03781] [EC:1.11.1.6]
BN1229_v1_2247  gyaR; Glyoxylate reductase [KO:K00015] [EC:1.1.1.26]
BN1229_v1_0470  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
BN1229_v1_0151  cbbZ; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BN1229_v1_3311  gph; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BN1229_v1_2115  sgaA; Serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BN1229_v1_4029  sgaA; Serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BN1229_v1_3673  sgaA; Serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BN1229_v1_2843  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BN1229_v1_2578  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BN1229_v1_1427  gcvP; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex [KO:K00281] [EC:1.4.4.2]
BN1229_v1_2362  putative Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
BN1229_v1_1023  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
BN1229_v1_1425  Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
BN1229_v1_2185  pdhL; Dihydrolipoamide dehydrogenase (E3) component ofpyruvate dehydrogenase [KO:K00382] [EC:1.8.1.4]
BN1229_v1_1127  lpd; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
BN1229_v1_1426  gcvH; glycine cleavage complex lipoylprotein [KO:K02437]
BN1229_v1_2328  ttuD; putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
BN1229_v1_3525  yeaU; putative tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BN1229_v1_2776  NAD-dependent formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
BN1229_v1_1607  Formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
BN1229_v1_3218  Formate dehydrogenase-O, major subunit [KO:K00123] [EC:1.17.1.9]
BN1229_v1_2774  Formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
BN1229_v1_3567  Tungsten-containing formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
BN1229_v1_3568  Tungsten-containing formate dehydrogenase beta subunit [KO:K22515] [EC:1.17.1.9]
BN1229_v1_2773  Formate dehydrogenase subunit beta [KO:K00124]
BN1229_v1_1609  fdhB; Formate dehydrogenase iron-sulfur subunit [KO:K00124]
BN1229_v1_3217  fdhB; Formate dehydrogenase iron-sulfur subunit [KO:K00124]
BN1229_v1_2772  Formate dehydrogenase subunit gamma [KO:K00127]
BN1229_v1_1611  putative Formate dehydrogenase, gamma subunit [KO:K00127]
BN1229_v1_3216  Formate dehydrogenase-O, gamma subunit [KO:K00127]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
fiy00010  Glycolysis / Gluconeogenesis
fiy00020  Citrate cycle (TCA cycle)
fiy00030  Pentose phosphate pathway
fiy00053  Ascorbate and aldarate metabolism
fiy00071  Fatty acid degradation
fiy00230  Purine metabolism
fiy00250  Alanine, aspartate and glutamate metabolism
fiy00260  Glycine, serine and threonine metabolism
fiy00620  Pyruvate metabolism
fiy00750  Vitamin B6 metabolism
fiy00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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