KEGG   PATHWAY: hom00020
Entry
hom00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Homoserinibacter sp. YIM 151385
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hom00020  Citrate cycle (TCA cycle)
hom00020

Module
hom_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hom00020]
hom_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hom00020]
hom_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hom00020]
hom_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hom00020]
hom_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hom00020]
Other DBs
GO: 0006099
Organism
Homoserinibacter sp. YIM 151385 [GN:hom]
Gene
OF852_00670  citrate synthase [KO:K01647] [EC:2.3.3.1]
OF852_11015  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01659] [EC:2.3.3.5]
OF852_02655  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
OF852_07475  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OF852_01185  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
OF852_02565  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OF852_12630  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OF852_12625  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OF852_07710  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OF852_07715  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
OF852_07700  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
OF852_07705  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
OF852_00395  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OF852_07995  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
OF852_04035  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
OF852_01395  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
OF852_02415  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
OF852_02560  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hom00010  Glycolysis / Gluconeogenesis
hom00053  Ascorbate and aldarate metabolism
hom00061  Fatty acid biosynthesis
hom00071  Fatty acid degradation
hom00190  Oxidative phosphorylation
hom00220  Arginine biosynthesis
hom00250  Alanine, aspartate and glutamate metabolism
hom00280  Valine, leucine and isoleucine degradation
hom00350  Tyrosine metabolism
hom00470  D-Amino acid metabolism
hom00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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