KEGG   PATHWAY: lrs00020
Entry
lrs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Limnoglobus roseus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lrs00020  Citrate cycle (TCA cycle)
lrs00020

Module
lrs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lrs00020]
lrs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lrs00020]
lrs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lrs00020]
lrs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lrs00020]
Other DBs
GO: 0006099
Organism
Limnoglobus roseus [GN:lrs]
Gene
PX52LOC_00754  citrate synthase [KO:K01647] [EC:2.3.3.1]
PX52LOC_08170  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PX52LOC_01084  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
PX52LOC_05439  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
PX52LOC_05448  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
PX52LOC_06034  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PX52LOC_06033  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PX52LOC_05462  lpdA_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PX52LOC_06032  lpdA_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PX52LOC_04284  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
PX52LOC_04285  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
PX52LOC_01595  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PX52LOC_01597  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PX52LOC_08162  sdhA; fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PX52LOC_08163  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PX52LOC_08161  succinate:quinone oxidoreductase [KO:K00241]
PX52LOC_07388  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PX52LOC_05875  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PX52LOC_05454  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PX52LOC_00213  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
PX52LOC_06164  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
PX52LOC_06165  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
PX52LOC_02380  hypothetical protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lrs00010  Glycolysis / Gluconeogenesis
lrs00053  Ascorbate and aldarate metabolism
lrs00061  Fatty acid biosynthesis
lrs00071  Fatty acid degradation
lrs00190  Oxidative phosphorylation
lrs00220  Arginine biosynthesis
lrs00250  Alanine, aspartate and glutamate metabolism
lrs00280  Valine, leucine and isoleucine degradation
lrs00350  Tyrosine metabolism
lrs00470  D-Amino acid metabolism
lrs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system