KEGG   PATHWAY: mah00020
Entry
mah00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Methylotuvimicrobium alcaliphilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mah00020  Citrate cycle (TCA cycle)
mah00020

Module
mah_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mah00020]
mah_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mah00020]
mah_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mah00020]
mah_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mah00020]
Other DBs
GO: 0006099
Organism
Methylotuvimicrobium alcaliphilum [GN:mah]
Gene
MEALZ_0281  fumC; Fumarate hydratase class II (fumarase C) [KO:K01679] [EC:4.2.1.2]
MEALZ_0287  korB; putative 2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MEALZ_0288  korA; putative 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MEALZ_0310  acnA; Aconitate hydratase (Citrate hydro-lyase) (Aconitase) [KO:K27802]
MEALZ_1357  pdhD; dihydrolipoamide dehydrogenase E3 component of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
MEALZ_1358  pdhB; pyruvate dehydrogenase E2 component; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
MEALZ_1359  pdhA; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MEALZ_1360  gltA; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MEALZ_1578  odhL; Dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
MEALZ_1579  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex) [KO:K00658] [EC:2.3.1.61]
MEALZ_1580  sucA; 2-oxoglutarate dehydrogenase E1 component (Alpha-ketoglutarate dehydrogenase) [KO:K00164] [EC:1.2.4.2]
MEALZ_1827  fumA; putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
MEALZ_2339  accC; Biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC) [KO:K01959] [EC:6.4.1.1]
MEALZ_2340  oadA; Oxaloacetate decarboxylase alpha chain [KO:K01960] [EC:6.4.1.1]
MEALZ_2679  sdhB; succinate dehydrogenase (ubiquinone), Fe-S protein [KO:K00240] [EC:1.3.5.1]
MEALZ_2680  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MEALZ_2681  [KO:K00242]
MEALZ_2682  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MEALZ_3024  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MEALZ_3025  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MEALZ_3026  icd; Isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
MEALZ_3220  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MEALZ_3290  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) [KO:K01902] [EC:6.2.1.5]
MEALZ_3291  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
MEALZ_3844  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MEALZ_3939  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mah00010  Glycolysis / Gluconeogenesis
mah00053  Ascorbate and aldarate metabolism
mah00061  Fatty acid biosynthesis
mah00071  Fatty acid degradation
mah00190  Oxidative phosphorylation
mah00220  Arginine biosynthesis
mah00250  Alanine, aspartate and glutamate metabolism
mah00280  Valine, leucine and isoleucine degradation
mah00350  Tyrosine metabolism
mah00470  D-Amino acid metabolism
mah00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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