KEGG   PATHWAY: mary00020
Entry
mary00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Macrococcus armenti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mary00020  Citrate cycle (TCA cycle)
mary00020

Module
mary_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mary00020]
mary_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mary00020]
mary_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mary00020]
mary_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mary00020]
mary_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mary00020]
Other DBs
GO: 0006099
Organism
Macrococcus armenti [GN:mary]
Gene
LAU42_02380  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LAU42_04140  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LAU42_04145  [KO:K00162] [EC:1.2.4.1]
LAU42_04150  [KO:K00627] [EC:2.3.1.12]
LAU42_04155  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LAU42_04255  [KO:K01958] [EC:6.4.1.1]
LAU42_04820  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LAU42_04825  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LAU42_05120  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LAU42_05125  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LAU42_05430  acnA; aconitate hydratase AcnA [KO:K27802]
LAU42_05690  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LAU42_05695  [KO:K00164] [EC:1.2.4.2]
LAU42_07380  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LAU42_07385  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LAU42_07390  [KO:K00241]
LAU42_07620  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LAU42_07625  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LAU42_07630  [KO:K01659] [EC:2.3.3.5]
LAU42_08440  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LAU42_08715  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mary00010  Glycolysis / Gluconeogenesis
mary00061  Fatty acid biosynthesis
mary00190  Oxidative phosphorylation
mary00220  Arginine biosynthesis
mary00250  Alanine, aspartate and glutamate metabolism
mary00280  Valine, leucine and isoleucine degradation
mary00470  D-Amino acid metabolism
mary00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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