KEGG   PATHWAY: mbt00020
Entry
mbt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis variant bovis BCG Tokyo 172
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbt00020  Citrate cycle (TCA cycle)
mbt00020

Module
mbt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mbt00020]
mbt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbt00020]
mbt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbt00020]
mbt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbt00020]
mbt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbt00020]
mbt_M00982  Methylcitrate cycle [PATH:mbt00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis variant bovis BCG Tokyo 172 [GN:mbt]
Gene
JTY_0068  icd2; putative isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JTY_0217  pckA; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
JTY_0254  [KO:K00240] [EC:1.3.5.1]
JTY_0255  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JTY_0472  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
JTY_0911  citA; citrate synthase II [KO:K01647] [EC:2.3.3.1]
JTY_0918  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
JTY_0975  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
JTY_0976  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
JTY_1131  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JTY_1165  gltA1; methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
JTY_1275  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JTY_1283  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
JTY_1512  acn; aconitate hydratase [KO:K27802]
JTY_1578  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
JTY_1579  frdB; putative fumarate reductase [KO:K00245] [EC:1.3.5.1]
JTY_1580  frdC; putative fumarate reductase [KO:K00246]
JTY_1581  frdD; fumarate reductase subunit D [KO:K00247]
JTY_2225  dlaT; dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
JTY_2252  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
JTY_2468  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JTY_2469  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JTY_2867  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
JTY_2983  pca; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
JTY_3342  sdhC_1; putative succinate dehydrogenase [KO:K00241]
JTY_3343  sdhD_1; putative succinate dehydrogenase [KO:K00242]
JTY_3362  sdhC_2; putative succinate dehydrogenase [KO:K00241]
JTY_3363  sdhD_2; putative succinate dehydrogenase [KO:K00242]
JTY_3382  sdhC_3; putative succinate dehydrogenase [KO:K00241]
JTY_3383  sdhD_3; putative succinate dehydrogenase [KO:K00242]
JTY_3384  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JTY_3385  sdhB; succinate dehydrogenase iron-sulphur protein subunit [KO:K00240] [EC:1.3.5.1]
JTY_3409  icd1; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbt00010  Glycolysis / Gluconeogenesis
mbt00053  Ascorbate and aldarate metabolism
mbt00061  Fatty acid biosynthesis
mbt00071  Fatty acid degradation
mbt00190  Oxidative phosphorylation
mbt00220  Arginine biosynthesis
mbt00250  Alanine, aspartate and glutamate metabolism
mbt00280  Valine, leucine and isoleucine degradation
mbt00350  Tyrosine metabolism
mbt00470  D-Amino acid metabolism
mbt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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