KEGG   PATHWAY: mcc00020
Entry
mcc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Macaca mulatta (rhesus monkey)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcc00020  Citrate cycle (TCA cycle)
mcc00020

Module
mcc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcc00020]
mcc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcc00020]
mcc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcc00020]
mcc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcc00020]
mcc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcc00020]
Other DBs
GO: 0006099
Organism
Macaca mulatta (rhesus monkey) [GN:mcc]
Gene
100423990  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
106992278  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
574227  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
677715  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
693991  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
694703  MDH1; malate dehydrogenase, cytoplasmic isoform MDH1 [KO:K00025] [EC:1.1.1.37]
696207  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
697454  SUCLG2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
698558  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
698854  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X4 [KO:K00164] [EC:1.2.4.2]
699810  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
700494  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
701006  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
701480  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
701966  [KO:K00236]
702309  [KO:K00236]
704336  [KO:K00236]
704434  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
705075  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
707441  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
707542  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
708018  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
708501  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
709359  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
709604  CS; citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
709776  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
710019  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
710930  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
711326  SDHD; succinate dehydrogenase complex, subunit D, integral membrane protein [KO:K00237]
713103  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
714922  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
716726  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
719978  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
719983  MDH2; malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
723069  [KO:K00234] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcc00010  Glycolysis / Gluconeogenesis
mcc00053  Ascorbate and aldarate metabolism
mcc00061  Fatty acid biosynthesis
mcc00062  Fatty acid elongation
mcc00071  Fatty acid degradation
mcc00190  Oxidative phosphorylation
mcc00220  Arginine biosynthesis
mcc00250  Alanine, aspartate and glutamate metabolism
mcc00280  Valine, leucine and isoleucine degradation
mcc00350  Tyrosine metabolism
mcc00470  D-Amino acid metabolism
mcc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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