KEGG   PATHWAY: mfg00020
Entry
mfg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium farcinogenes
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mfg00020  Citrate cycle (TCA cycle)
mfg00020

Module
mfg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mfg00020]
mfg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mfg00020]
mfg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mfg00020]
mfg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mfg00020]
mfg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mfg00020]
mfg_M00982  Methylcitrate cycle [PATH:mfg00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium farcinogenes [GN:mfg]
Gene
K6L26_00115  [KO:K01596] [EC:4.1.1.32]
K6L26_06900  [KO:K01647] [EC:2.3.3.1]
K6L26_06920  [KO:K01647] [EC:2.3.3.1]
K6L26_07660  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K6L26_07665  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K6L26_08980  [KO:K01679] [EC:4.2.1.2]
K6L26_09840  [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
K6L26_11720  [KO:K01659] [EC:2.3.3.5]
K6L26_12030  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K6L26_12035  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K6L26_13150  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
K6L26_13355  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
K6L26_17760  [KO:K27802]
K6L26_18600  [KO:K01676] [EC:4.2.1.2]
K6L26_19950  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
K6L26_20735  [KO:K01958] [EC:6.4.1.1]
K6L26_23415  [KO:K00024] [EC:1.1.1.37]
K6L26_24110  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
K6L26_24115  [KO:K00242]
K6L26_24120  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K6L26_24125  [KO:K00240] [EC:1.3.5.1]
K6L26_24250  [KO:K00031] [EC:1.1.1.42]
K6L26_27075  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6L26_29370  [KO:K01958] [EC:6.4.1.1]
K6L26_29755  [KO:K00239] [EC:1.3.5.1]
K6L26_29760  [KO:K00240] [EC:1.3.5.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mfg00010  Glycolysis / Gluconeogenesis
mfg00053  Ascorbate and aldarate metabolism
mfg00061  Fatty acid biosynthesis
mfg00071  Fatty acid degradation
mfg00190  Oxidative phosphorylation
mfg00220  Arginine biosynthesis
mfg00250  Alanine, aspartate and glutamate metabolism
mfg00280  Valine, leucine and isoleucine degradation
mfg00350  Tyrosine metabolism
mfg00470  D-Amino acid metabolism
mfg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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