KEGG   PATHWAY: mhev00020
Entry
mhev00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium helvum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhev00020  Citrate cycle (TCA cycle)
mhev00020

Module
mhev_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhev00020]
mhev_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhev00020]
mhev_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhev00020]
mhev_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhev00020]
mhev_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhev00020]
mhev_M00982  Methylcitrate cycle [PATH:mhev00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium helvum [GN:mhev]
Gene
MHEL_02170  orB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MHEL_02180  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MHEL_07980  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MHEL_10180  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MHEL_15020  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MHEL_18510  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MHEL_18520  [KO:K00240] [EC:1.3.5.1]
MHEL_19230  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MHEL_30720  [KO:K01647] [EC:2.3.3.1]
MHEL_30770  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MHEL_32000  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MHEL_32010  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MHEL_32050  pdhD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MHEL_35130  [KO:K00031] [EC:1.1.1.42]
MHEL_35350  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MHEL_35360  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MHEL_35370  sdhD; succinate dehydrogenase [KO:K00242]
MHEL_35380  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MHEL_37550  [KO:K00627] [EC:2.3.1.12]
MHEL_38130  gltA1; citrate synthase [KO:K01659] [EC:2.3.3.5]
MHEL_38140  pyc_1; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MHEL_40660  nifJ-1; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
MHEL_42870  pyc_2; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MHEL_44530  mqo_1; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MHEL_48870  acnA; aconitate hydratase A [KO:K27802]
MHEL_49830  mqo_2; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MHEL_59000  sucB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MHEL_60210  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhev00010  Glycolysis / Gluconeogenesis
mhev00053  Ascorbate and aldarate metabolism
mhev00061  Fatty acid biosynthesis
mhev00071  Fatty acid degradation
mhev00190  Oxidative phosphorylation
mhev00220  Arginine biosynthesis
mhev00250  Alanine, aspartate and glutamate metabolism
mhev00280  Valine, leucine and isoleucine degradation
mhev00350  Tyrosine metabolism
mhev00470  D-Amino acid metabolism
mhev00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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