KEGG   PATHWAY: mmma00030
Entry
mmma00030                   Pathway                                
Name
Pentose phosphate pathway - Marmota marmota marmota (Alpine marmot)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmma00030  Pentose phosphate pathway
mmma00030

Module
mmma_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:mmma00030]
mmma_M00005  PRPP biosynthesis, ribose-5P => PRPP [PATH:mmma00030]
mmma_M00006  Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:mmma00030]
mmma_M00007  Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:mmma00030]
Other DBs
GO: 0006098
Organism
Marmota marmota marmota (Alpine marmot) [GN:mmma]
Gene
107133721  [KO:K01053] [EC:3.1.1.17]
107133770  [KO:K01053] [EC:3.1.1.17]
107136169  Pfkl; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
107137395  Rbks; ribokinase isoform X1 [KO:K00852] [EC:2.7.1.15]
107138382  Rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
107139174  Pgm2; phosphopentomutase isoform X2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
107141691  Pgm1; phosphoglucomutase-1 isoform X1 [KO:K01835] [EC:5.4.2.2]
107142670  Tktl2; transketolase-like protein 2 isoform X1 [KO:K00615] [EC:2.2.1.1]
107143409  Glyctk; glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
107143914  [KO:K01783] [EC:5.1.3.1]
107144125  Prps2; ribose-phosphate pyrophosphokinase 2 isoform X2 [KO:K00948] [EC:2.7.6.1]
107144332  Rgn; regucalcin isoform X2 [KO:K01053] [EC:3.1.1.17]
107145341  Pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
107146917  Aldoa; fructose-bisphosphate aldolase A isoform X1 [KO:K01623] [EC:4.1.2.13]
107147742  Aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
107148581  Pfkm; ATP-dependent 6-phosphofructokinase, muscle type [KO:K00850] [EC:2.7.1.11]
107149625  Tkt; transketolase isoform X1 [KO:K00615] [EC:2.2.1.1]
107150196  [KO:K00850] [EC:2.7.1.11]
107151509  Gpi; glucose-6-phosphate isomerase isoform X1 [KO:K01810] [EC:5.3.1.9]
107152410  Prps1; ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
107152657  Prps1l1; ribose-phosphate pyrophosphokinase 3 [KO:K00948] [EC:2.7.6.1]
107152760  Dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
107155261  Aldoc; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
107155513  Pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
107155527  H6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
107156913  Taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
107157625  Fbp1; fructose-1,6-bisphosphatase 1 isoform X1 [KO:K03841] [EC:3.1.3.11]
107157629  Fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
107159364  Shpk; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
107159478  Idnk; probable gluconokinase isoform X2 [KO:K00851] [EC:2.7.1.12]
107159745  Rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
107160277  Tktl1; LOW QUALITY PROTEIN: transketolase-like protein 1 [KO:K00615] [EC:2.2.1.1]
107160283  G6pd; glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
mmma00010  Glycolysis / Gluconeogenesis
mmma00040  Pentose and glucuronate interconversions
mmma00052  Galactose metabolism
mmma00230  Purine metabolism
mmma00240  Pyrimidine metabolism
mmma00340  Histidine metabolism
mmma00630  Glyoxylate and dicarboxylate metabolism
mmma00750  Vitamin B6 metabolism
KO pathway
ko00030   

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