KEGG   PATHWAY: mtue00020
Entry
mtue00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis EAI5/NITR206
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtue00020  Citrate cycle (TCA cycle)
mtue00020

Module
mtue_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtue00020]
mtue_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtue00020]
mtue_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtue00020]
mtue_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtue00020]
mtue_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtue00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis EAI5/NITR206 [GN:mtue]
Gene
J114_04735  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
J114_04780  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
J114_06100  citrate synthase [KO:K01647] [EC:2.3.3.1]
J114_07920  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
J114_17895  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J114_00365  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J114_06725  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
J114_02460  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
J114_13150  oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
J114_13145  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
J114_05115  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
J114_05110  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
J114_01355  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J114_17795  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J114_01350  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J114_17800  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J114_17785  succinate dehydrogenase cytochrome B-556 subunit sdhC [KO:K00241]
J114_17790  succinate dehydrogenase [KO:K00242]
J114_08335  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
J114_08340  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00245] [EC:1.3.5.1]
J114_08345  fumarate reductase iron-sulfur subunit FrdB/membrane anchor subunit FrdC [KO:K00246]
J114_08350  fumarate reductase subunit D [KO:K00247]
J114_05935  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J114_06685  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J114_15205  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
J114_15850  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
J114_01160  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
J114_12015  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
J114_11860  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtue00010  Glycolysis / Gluconeogenesis
mtue00053  Ascorbate and aldarate metabolism
mtue00061  Fatty acid biosynthesis
mtue00071  Fatty acid degradation
mtue00190  Oxidative phosphorylation
mtue00220  Arginine biosynthesis
mtue00250  Alanine, aspartate and glutamate metabolism
mtue00280  Valine, leucine and isoleucine degradation
mtue00350  Tyrosine metabolism
mtue00470  D-Amino acid metabolism
mtue00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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