KEGG   PATHWAY: mvd00020
Entry
mvd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Microterricola viridarii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mvd00020  Citrate cycle (TCA cycle)
mvd00020

Module
mvd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mvd00020]
mvd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mvd00020]
mvd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mvd00020]
Other DBs
GO: 0006099
Organism
Microterricola viridarii [GN:mvd]
Gene
AWU67_09190  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AWU67_15030  citrate synthase/methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
AWU67_04900  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AWU67_08355  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWU67_02290  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AWU67_06455  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWU67_01410  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AWU67_01405  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AWU67_08045  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AWU67_01725  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AWU67_09060  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AWU67_01720  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AWU67_09065  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AWU67_01735  succinate dehydrogenase [KO:K00241]
AWU67_09055  succinate dehydrogenase [KO:K00241]
AWU67_01730  succinate dehydrogenase [KO:K00242]
AWU67_00270  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AWU67_11635  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AWU67_07480  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AWU67_11140  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AWU67_11760  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AWU67_06610  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AWU67_06460  dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mvd00010  Glycolysis / Gluconeogenesis
mvd00053  Ascorbate and aldarate metabolism
mvd00061  Fatty acid biosynthesis
mvd00071  Fatty acid degradation
mvd00190  Oxidative phosphorylation
mvd00220  Arginine biosynthesis
mvd00250  Alanine, aspartate and glutamate metabolism
mvd00280  Valine, leucine and isoleucine degradation
mvd00350  Tyrosine metabolism
mvd00470  D-Amino acid metabolism
mvd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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