KEGG   PATHWAY: nmm00020
Entry
nmm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria meningitidis M01-240149 (serogroup B)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nmm00020  Citrate cycle (TCA cycle)
nmm00020

Module
nmm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nmm00020]
nmm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nmm00020]
nmm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nmm00020]
nmm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nmm00020]
nmm_M00982  Methylcitrate cycle [PATH:nmm00020]
Other DBs
GO: 0006099
Organism
Neisseria meningitidis M01-240149 (serogroup B) [GN:nmm]
Gene
NMBM01240149_0565  [KO:K01676] [EC:4.2.1.2]
NMBM01240149_0609  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NMBM01240149_0706  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
NMBM01240149_0811  [KO:K00382] [EC:1.8.1.4]
NMBM01240149_0813  aceF; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
NMBM01240149_0814  aceE; pyruvate dehydrogenase, homodimeric type [KO:K00163] [EC:1.2.4.1]
NMBM01240149_1129  [KO:K01902] [EC:6.2.1.5]
NMBM01240149_1130  [KO:K01903] [EC:6.2.1.5]
NMBM01240149_1132  [KO:K00382] [EC:1.8.1.4]
NMBM01240149_1133  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase succinyl-transferring complex [KO:K00658] [EC:2.3.1.61]
NMBM01240149_1134  sucA; oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
NMBM01240149_1135  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
NMBM01240149_1137  [KO:K00240] [EC:1.3.5.1]
NMBM01240149_1138  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NMBM01240149_1139  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NMBM01240149_1140  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NMBM01240149_1141  [KO:K00382] [EC:1.8.1.4]
NMBM01240149_1167  [KO:K00031] [EC:1.1.1.42]
NMBM01240149_1658  [KO:K01659] [EC:2.3.3.5]
NMBM01240149_2000  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nmm00010  Glycolysis / Gluconeogenesis
nmm00061  Fatty acid biosynthesis
nmm00071  Fatty acid degradation
nmm00190  Oxidative phosphorylation
nmm00220  Arginine biosynthesis
nmm00250  Alanine, aspartate and glutamate metabolism
nmm00280  Valine, leucine and isoleucine degradation
nmm00350  Tyrosine metabolism
nmm00470  D-Amino acid metabolism
nmm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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