KEGG   PATHWAY: nms00020
Entry
nms00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria meningitidis M01-240355 (serogroup B)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nms00020  Citrate cycle (TCA cycle)
nms00020

Module
nms_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nms00020]
nms_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nms00020]
nms_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nms00020]
nms_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nms00020]
Other DBs
GO: 0006099
Organism
Neisseria meningitidis M01-240355 (serogroup B) [GN:nms]
Gene
NMBM01240355_0951  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
NMBM01240355_0439  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
NMBM01240355_1484  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NMBM01240355_0919  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
NMBM01240355_0952  sucA; oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
NMBM01240355_0953  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase succinyl-transferring complex [KO:K00658] [EC:2.3.1.61]
NMBM01240355_0945  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [KO:K00382] [EC:1.8.1.4]
NMBM01240355_0954  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NMBM01240355_1278  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NMBM01240355_0957  succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
NMBM01240355_0956  succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
NMBM01240355_0948  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NMBM01240355_0949  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NMBM01240355_0946  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NMBM01240355_0947  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
NMBM01240355_1542  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
NMBM01240355_1388  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
NMBM01240355_2034  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
NMBM01240355_1276  aceE; pyruvate dehydrogenase, homodimeric type [KO:K00163] [EC:1.2.4.1]
NMBM01240355_1277  aceF; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nms00010  Glycolysis / Gluconeogenesis
nms00061  Fatty acid biosynthesis
nms00071  Fatty acid degradation
nms00190  Oxidative phosphorylation
nms00220  Arginine biosynthesis
nms00250  Alanine, aspartate and glutamate metabolism
nms00280  Valine, leucine and isoleucine degradation
nms00350  Tyrosine metabolism
nms00470  D-Amino acid metabolism
nms00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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