KEGG   PATHWAY: onl00020
Entry
onl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Oreochromis niloticus (Nile tilapia)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
onl00020  Citrate cycle (TCA cycle)
onl00020

Module
onl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:onl00020]
onl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:onl00020]
onl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:onl00020]
onl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:onl00020]
onl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:onl00020]
Other DBs
GO: 0006099
Organism
Oreochromis niloticus (Nile tilapia) [GN:onl]
Gene
100689795  [KO:K00658] [EC:2.3.1.61]
100689946  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
100689951  [KO:K00658] [EC:2.3.1.61]
100690537  acly; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
100690661  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100690705  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
100691217  pdha1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform X2 [KO:K00161] [EC:1.2.4.1]
100691871  [KO:K00030] [EC:1.1.1.41]
100692119  [KO:K00030] [EC:1.1.1.41]
100692487  [KO:K00030] [EC:1.1.1.41]
100692881  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
100694419  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
100696099  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
100698186  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
100698799  [KO:K00237]
100702411  [KO:K00031] [EC:1.1.1.42]
100702933  [KO:K00164] [EC:1.2.4.2]
100705239  [KO:K00235] [EC:1.3.5.1]
100705334  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
100705559  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
100705761  [KO:K00161] [EC:1.2.4.1]
100706440  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
100706460  suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100706997  [KO:K01648] [EC:2.3.3.8]
100707459  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
100707874  [KO:K00031] [EC:1.1.1.42]
100708317  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
100708951  ogdh; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
100709338  [KO:K00161] [EC:1.2.4.1]
100709891  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100710143  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
100710696  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100711262  [KO:K00025] [EC:1.1.1.37]
100711594  pc; pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
100711722  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
100711978  [KO:K00025] [EC:1.1.1.37]
100711999  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
100712084  [KO:K00235] [EC:1.3.5.1]
100712273  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109194175  [KO:K00237]
109199991  [KO:K00237]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
onl00010  Glycolysis / Gluconeogenesis
onl00053  Ascorbate and aldarate metabolism
onl00061  Fatty acid biosynthesis
onl00062  Fatty acid elongation
onl00071  Fatty acid degradation
onl00190  Oxidative phosphorylation
onl00220  Arginine biosynthesis
onl00250  Alanine, aspartate and glutamate metabolism
onl00280  Valine, leucine and isoleucine degradation
onl00350  Tyrosine metabolism
onl00470  D-Amino acid metabolism
onl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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