KEGG   PATHWAY: paei00020
Entry
paei00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas aeruginosa PAO1-VE2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
paei00020  Citrate cycle (TCA cycle)
paei00020

Module
paei_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:paei00020]
paei_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:paei00020]
paei_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:paei00020]
paei_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:paei00020]
paei_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:paei00020]
paei_M00982  Methylcitrate cycle [PATH:paei00020]
Other DBs
GO: 0006099
Organism
Pseudomonas aeruginosa PAO1-VE2 [GN:paei]
Gene
N296_1606  acnA; aconitate hydratase 1 [KO:K27802]
N296_1625  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
N296_1626  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
N296_1627  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
N296_1628  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N296_1629  [KO:K00240] [EC:1.3.5.1]
N296_1630  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
N296_1631  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
N296_1632  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N296_1633  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
N296_1634  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
N296_1835  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
N296_2323  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N296_2703  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
N296_2704  [KO:K00031] [EC:1.1.1.42]
N296_3575  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
N296_4284  acoC; dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system [KO:K00627] [EC:2.3.1.12]
N296_4475  [KO:K01676] [EC:4.2.1.2]
N296_4616  [KO:K01679] [EC:4.2.1.2]
N296_4795  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
N296_4998  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N296_5188  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
N296_5189  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
N296_5370  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
N296_5621  oadA; oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
N296_5622  accC; biotin carboxylase [KO:K01959] [EC:6.4.1.1]
N296_5633  [KO:K18118] [EC:2.8.3.18]
N296_822  [KO:K01659] [EC:2.3.3.5]
N296_881  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
paei00010  Glycolysis / Gluconeogenesis
paei00053  Ascorbate and aldarate metabolism
paei00061  Fatty acid biosynthesis
paei00071  Fatty acid degradation
paei00190  Oxidative phosphorylation
paei00220  Arginine biosynthesis
paei00250  Alanine, aspartate and glutamate metabolism
paei00280  Valine, leucine and isoleucine degradation
paei00350  Tyrosine metabolism
paei00470  D-Amino acid metabolism
paei00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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