KEGG   PATHWAY: pals00020
Entry
pals00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paracoccus albus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pals00020  Citrate cycle (TCA cycle)
pals00020

Module
pals_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pals00020]
pals_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pals00020]
pals_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pals00020]
pals_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pals00020]
pals_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pals00020]
pals_M00982  Methylcitrate cycle [PATH:pals00020]
Other DBs
GO: 0006099
Organism
Paracoccus albus [GN:pals]
Gene
PAF20_02120  acnA; aconitate hydratase AcnA [KO:K27802]
PAF20_03190  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PAF20_03195  [KO:K00164] [EC:1.2.4.2]
PAF20_03210  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PAF20_03215  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PAF20_03225  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PAF20_03245  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PAF20_03250  [KO:K00242]
PAF20_03255  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PAF20_03270  [KO:K00240] [EC:1.3.5.1]
PAF20_07600  [KO:K01958] [EC:6.4.1.1]
PAF20_07710  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PAF20_07715  [KO:K00162] [EC:1.2.4.1]
PAF20_07720  [KO:K00627] [EC:2.3.1.12]
PAF20_07845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PAF20_09135  [KO:K00031] [EC:1.1.1.42]
PAF20_10445  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PAF20_11120  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PAF20_11765  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PAF20_12005  [KO:K01610] [EC:4.1.1.49]
PAF20_13385  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
PAF20_14400  [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pals00010  Glycolysis / Gluconeogenesis
pals00053  Ascorbate and aldarate metabolism
pals00061  Fatty acid biosynthesis
pals00071  Fatty acid degradation
pals00190  Oxidative phosphorylation
pals00220  Arginine biosynthesis
pals00250  Alanine, aspartate and glutamate metabolism
pals00280  Valine, leucine and isoleucine degradation
pals00350  Tyrosine metabolism
pals00470  D-Amino acid metabolism
pals00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system