KEGG   PATHWAY: palv00020
Entry
palv00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas alvandae SWRI17
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
palv00020  Citrate cycle (TCA cycle)
palv00020

Module
palv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:palv00020]
palv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:palv00020]
palv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:palv00020]
palv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:palv00020]
palv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:palv00020]
palv_M00982  Methylcitrate cycle [PATH:palv00020]
Other DBs
GO: 0006099
Organism
Pseudomonas alvandae SWRI17 [GN:palv]
Gene
KSS97_00610  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
KSS97_00615  [KO:K01959] [EC:6.4.1.1]
KSS97_00745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS97_01660  [KO:K18118] [EC:2.8.3.18]
KSS97_02390  [KO:K01610] [EC:4.1.1.49]
KSS97_03515  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
KSS97_03520  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KSS97_06825  [KO:K01676] [EC:4.2.1.2]
KSS97_08590  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KSS97_08595  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KSS97_08600  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KSS97_08605  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KSS97_08610  [KO:K00240] [EC:1.3.5.1]
KSS97_08615  [KO:K00164] [EC:1.2.4.2]
KSS97_08620  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KSS97_08625  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS97_08630  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KSS97_08635  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KSS97_09495  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
KSS97_09980  acnA; aconitate hydratase AcnA [KO:K27802]
KSS97_11405  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS97_12250  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KSS97_15270  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS97_15510  [KO:K00627] [EC:2.3.1.12]
KSS97_16965  [KO:K01647] [EC:2.3.3.1]
KSS97_18205  [KO:K00627] [EC:2.3.1.12]
KSS97_18870  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KSS97_18875  [KO:K00031] [EC:1.1.1.42]
KSS97_20840  [KO:K01679] [EC:4.2.1.2]
KSS97_24195  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
palv00010  Glycolysis / Gluconeogenesis
palv00053  Ascorbate and aldarate metabolism
palv00061  Fatty acid biosynthesis
palv00071  Fatty acid degradation
palv00190  Oxidative phosphorylation
palv00220  Arginine biosynthesis
palv00250  Alanine, aspartate and glutamate metabolism
palv00280  Valine, leucine and isoleucine degradation
palv00350  Tyrosine metabolism
palv00470  D-Amino acid metabolism
palv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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