KEGG   PATHWAY: pasg00020
Entry
pasg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas asgharzadehiana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pasg00020  Citrate cycle (TCA cycle)
pasg00020

Module
pasg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pasg00020]
pasg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pasg00020]
pasg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pasg00020]
pasg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pasg00020]
pasg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pasg00020]
pasg_M00982  Methylcitrate cycle [PATH:pasg00020]
Other DBs
GO: 0006099
Organism
Pseudomonas asgharzadehiana [GN:pasg]
Gene
KSS96_00565  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
KSS96_00570  [KO:K01959] [EC:6.4.1.1]
KSS96_01405  [KO:K18118] [EC:2.8.3.18]
KSS96_02070  [KO:K01610] [EC:4.1.1.49]
KSS96_03255  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
KSS96_03260  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KSS96_05180  [KO:K01679] [EC:4.2.1.2]
KSS96_05330  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS96_08340  acnA; aconitate hydratase AcnA [KO:K27802]
KSS96_08590  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KSS96_09425  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KSS96_09430  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KSS96_09435  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KSS96_09440  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KSS96_09445  [KO:K00240] [EC:1.3.5.1]
KSS96_09450  [KO:K00164] [EC:1.2.4.2]
KSS96_09455  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KSS96_09460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS96_09465  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KSS96_09470  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KSS96_13655  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KSS96_16960  [KO:K00627] [EC:2.3.1.12]
KSS96_17750  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KSS96_17755  [KO:K00031] [EC:1.1.1.42]
KSS96_18255  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KSS96_18605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSS96_19880  [KO:K01679] [EC:4.2.1.2]
KSS96_21435  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
KSS96_23015  [KO:K01676] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pasg00010  Glycolysis / Gluconeogenesis
pasg00053  Ascorbate and aldarate metabolism
pasg00061  Fatty acid biosynthesis
pasg00071  Fatty acid degradation
pasg00190  Oxidative phosphorylation
pasg00220  Arginine biosynthesis
pasg00250  Alanine, aspartate and glutamate metabolism
pasg00280  Valine, leucine and isoleucine degradation
pasg00350  Tyrosine metabolism
pasg00470  D-Amino acid metabolism
pasg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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