KEGG   PATHWAY: acep03018
Entry
acep03018                   Pathway                                
Name
RNA degradation - Atta cephalotes (leaf cutting ant)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
acep03018  RNA degradation
acep03018

Other DBs
GO: 0006401
Organism
Atta cephalotes (leaf cutting ant) [GN:acep]
Gene
105619523  m7GpppX diphosphatase [KO:K12584] [EC:3.6.1.59]
105619625  uncharacterized protein LOC105619625 [KO:K03679]
105618973  exosome complex component RRP40 [KO:K03681]
105625141  exosome complex component RRP43-like [KO:K12586]
105617631  exosome complex component MTR3-like [KO:K12587]
105621335  exosome complex exonuclease RRP42 [KO:K12589]
105626055  exosome complex component RRP41 [KO:K11600]
105618179  exosome complex component RRP46 [KO:K12590]
105619234  exosome complex component RRP45 [KO:K03678]
105627573  LOW QUALITY PROTEIN: exosome component 10 [KO:K12591] [EC:3.1.13.-]
105624585  nuclear nucleic acid-binding protein C1D-like [KO:K12592]
105627728  M-phase phosphoprotein 6 [KO:K12593]
105622677  non-canonical poly(A) RNA polymerase PAPD5-like [KO:K03514] [EC:2.7.7.19]
105619504  uncharacterized protein LOC105619504 [KO:K12597]
105627092  superkiller viralicidic activity 2-like 2 isoform X1 [KO:K12598] [EC:5.6.2.6]
105622072  helicase SKI2W [KO:K12599] [EC:5.6.2.6]
105618194  tetratricopeptide repeat protein 37 [KO:K12600]
105620767  WD repeat-containing protein 61 [KO:K12602]
105619674  CCR4-NOT transcription complex subunit 6-like [KO:K12603] [EC:3.1.13.4]
105617639  CCR4-NOT transcription complex subunit 1 [KO:K12604]
105622392  CCR4-NOT transcription complex subunit 2 [KO:K12605]
105627110  CCR4-NOT transcription complex subunit 3 [KO:K12580]
105622059  alpha-protein kinase 1 [KO:K10643] [EC:2.3.2.27]
105617200  CCR4-NOT transcription complex subunit 7 [KO:K12581]
105623590  cell differentiation protein RCD1 homolog [KO:K12606]
105622708  CCR4-NOT transcription complex subunit 10 [KO:K12607]
105623380  ATP-dependent RNA helicase DHX36 [KO:K14442] [EC:5.6.2.6]
105625181  poly(A)-specific ribonuclease PARN-like domain-containing protein 1 [KO:K01148] [EC:3.1.13.4]
105620263  LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PARN-like [KO:K01148] [EC:3.1.13.4]
105626429  protein Tob1-like [KO:K14443]
105623083  protein BTG3-like [KO:K14443]
105627171  polyadenylate-binding protein 4-like [KO:K13126]
105627172  polyadenylate-binding protein 4-like [KO:K13126]
105619460  PAB-dependent poly(A)-specific ribonuclease subunit PAN2 [KO:K12571] [EC:3.1.13.4]
105618936  PAB-dependent poly(A)-specific ribonuclease subunit PAN3 [KO:K12572]
105622917  mRNA-decapping enzyme 1B [KO:K12611] [EC:3.-.-.-]
105626728  m7GpppN-mRNA hydrolase [KO:K12613] [EC:3.6.1.62]
105625580  putative ATP-dependent RNA helicase me31b [KO:K12614] [EC:5.6.2.7]
105623116  enhancer of mRNA-decapping protein 3 [KO:K12615]
105624131  enhancer of mRNA-decapping protein 4 [KO:K12616]
105623483  protein PAT1 homolog 1 [KO:K12617]
105621109  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
105621236  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
105620859  U6 snRNA-associated Sm-like protein LSm1 [KO:K12620]
105619859  U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
105618989  sm-like protein LSM3A [KO:K12622]
105617675  U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
105621418  U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
105624101  U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
105620755  U6 snRNA-associated Sm-like protein LSm7 [KO:K12626]
105624818  U6 snRNA-associated Sm-like protein LSm8 [KO:K12627]
105624885  alpha-enolase-like [KO:K01689] [EC:4.2.1.11]
105616990  enolase [KO:K01689] [EC:4.2.1.11]
105621871  polyribonucleotide nucleotidyltransferase 1, mitochondrial [KO:K00962] [EC:2.7.7.8]
105622383  ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
105625903  heat shock 70 kDa protein cognate 5 [KO:K04043]
105620115  60 kDa heat shock protein, mitochondrial-like [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
acep03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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