KEGG   PATHWAY: afb00030
Entry
afb00030                    Pathway                                
Name
Pentose phosphate pathway - Anoplopoma fimbria (sablefish)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afb00030  Pentose phosphate pathway
afb00030

Module
afb_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:afb00030]
afb_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:afb00030]
afb_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:afb00030]
afb_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:afb00030]
Other DBs
GO: 0006098
Organism
Anoplopoma fimbria (sablefish) [GN:afb]
Gene
129099872  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
129107943  gpia; glucose-6-phosphate isomerase a [KO:K01810] [EC:5.3.1.9]
129099593  glucose-6-phosphate 1-dehydrogenase-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
129099977  g6pd; glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
129098886  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
129106463  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
129099841  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
129104602  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
129099296  tktb; transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
129099843  transketolase-like [KO:K00615] [EC:2.2.1.1]
129106078  transketolase-like [KO:K00615] [EC:2.2.1.1]
129101914  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
129103066  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
129113484  shpk; LOW QUALITY PROTEIN: sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
129112745  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
129103110  rbks; ribokinase [KO:K00852] [EC:2.7.1.15]
129094601  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
129114034  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
129095823  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
129089641  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
129111687  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
129111543  LOW QUALITY PROTEIN: regucalcin-like [KO:K01053] [EC:3.1.1.17]
129101431  probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
129105520  glyctk; glycerate kinase [KO:K11529] [EC:2.7.1.165]
129105499  aldoca; LOW QUALITY PROTEIN: fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
129090301  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
129091028  aldoab; aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
129113129  aldocb; fructose-bisphosphate aldolase C-B [KO:K01623] [EC:4.1.2.13]
129097892  fructose-bisphosphate aldolase A-like [KO:K01623] [EC:4.1.2.13]
129100946  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
129101208  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
129102098  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
129099382  pfkma; phosphofructokinase, muscle a [KO:K00850] [EC:2.7.1.11]
129105029  pfkla; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
129110455  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
129106485  pfkmb; phosphofructokinase, muscle b isoform X1 [KO:K00850] [EC:2.7.1.11]
129116238  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
afb00010  Glycolysis / Gluconeogenesis
afb00040  Pentose and glucuronate interconversions
afb00052  Galactose metabolism
afb00230  Purine metabolism
afb00240  Pyrimidine metabolism
afb00340  Histidine metabolism
afb00630  Glyoxylate and dicarboxylate metabolism
afb00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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