KEGG   PATHWAY: amal03440
Entry
amal03440                   Pathway                                
Name
Homologous recombination - Alteromonas mediterranea U4
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
amal03440  Homologous recombination
amal03440

Other DBs
GO: 0000724
Organism
Alteromonas mediterranea U4 [GN:amal]
Gene
I607_03615  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
I607_01105  single-strand binding protein [KO:K03111]
I607_00015  recombinational DNA repair ATPase [KO:K03629]
I607_03625  DNA repair protein RecO [KO:K03584]
I607_12385  recombination protein RecR [KO:K06187]
I607_04365  recombinase A [KO:K03553]
I607_00070  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
I607_06190  Holliday junction DNA helicase motor protein [KO:K03550]
I607_06195  ruvB; Holliday junction DNA helicase RuvB [KO:K03551] [EC:5.6.2.4]
I607_06185  holliday junction resolvase [KO:K01159] [EC:3.1.21.10]
I607_00685  ATP-dependent DNA helicase RecG [KO:K03655] [EC:5.6.2.4]
I607_11245  exodeoxyribonuclease V subunit beta [KO:K03582] [EC:3.1.11.5]
I607_11250  exodeoxyribonuclease V subunit gamma [KO:K03583] [EC:3.1.11.5]
I607_11240  exodeoxyribonuclease V subunit alpha [KO:K03581] [EC:3.1.11.5]
I607_04665  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
I607_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
I607_12405  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
I607_08650  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
I607_08045  DNA polymerase III subunit delta [KO:K02341] [EC:2.7.7.7]
I607_07870  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
I607_16500  DNA polymerase [KO:K02342] [EC:2.7.7.7]
I607_18360  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
I607_15265  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
I607_17205  primosome assembly protein PriA [KO:K04066] [EC:5.6.2.4]
I607_19195  flavodoxin [KO:K02317]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   
LinkDB

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