KEGG   PATHWAY: apib03430
Entry
apib03430                   Pathway                                
Name
Mismatch repair - Apibacter sp. B2966
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
apib03430  Mismatch repair
apib03430

Other DBs
GO: 0006298
Organism
Apibacter sp. B2966 [GN:apib]
Gene
G8C43_08700  mutS; DNA mismatch repair protein MutS [KO:K03555]
G8C43_09420  DNA mismatch repair protein MutS [KO:K07456]
G8C43_08790  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
G8C43_03540  UvrD-helicase domain-containing protein [KO:K03657] [EC:5.6.2.4]
G8C43_07225  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
G8C43_06360  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
G8C43_04015  ssb; single-stranded DNA-binding protein [KO:K03111]
G8C43_03890  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
G8C43_08615  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
G8C43_09350  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
G8C43_05000  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
G8C43_05355  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
G8C43_04725  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
G8C43_07535  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
G8C43_05050  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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