KEGG   PATHWAY: apln03008
Entry
apln03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Agrilus planipennis (emerald ash borer)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
apln03008  Ribosome biogenesis in eukaryotes
apln03008

Organism
Agrilus planipennis (emerald ash borer) [GN:apln]
Gene
108741875  casein kinase II subunit beta [KO:K03115]
108737308  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
108734304  casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
108738744  nucleolar protein 6 [KO:K14544]
108737190  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
108738329  WD repeat-containing protein 43 [KO:K14546]
112906237  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
108741783  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
112906861  WD repeat-containing protein 75-like [KO:K14552]
108737065  WD repeat-containing protein 75 [KO:K14552]
112906862  WD repeat-containing protein 75-like [KO:K14552]
108741391  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
108743086  WD repeat-containing protein 36 [KO:K14554]
108740064  transducin beta-like protein 3 [KO:K14555]
108741560  WD repeat-containing protein 3 [KO:K14556]
108736881  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
108738977  periodic tryptophan protein 2 homolog [KO:K14558]
108742565  U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [KO:K14559]
108739055  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
108744709  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
112905108  nucleolar protein 56-like [KO:K14564]
108732491  nucleolar protein 56 [KO:K14564]
108741053  nucleolar protein 58 [KO:K14565]
108737177  NHP2-like protein 1 [KO:K12845]
108742458  H/ACA ribonucleoprotein complex subunit 4-like [KO:K11131] [EC:5.4.99.-]
112903874  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
108743242  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
108732751  probable H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
112903986  H/ACA ribonucleoprotein complex subunit 3-like [KO:K11130]
108741486  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
108740234  rRNA-processing protein FCF1 homolog [KO:K14566]
112906478  U3 small nucleolar RNA-associated protein 14 homolog B-like [KO:K14567]
108737822  U3 small nucleolar RNA-associated protein 14 homolog B [KO:K14567]
108741661  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
108738995  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
108742782  ribosome biogenesis protein BMS1 homolog [KO:K14569]
108738166  RNA cytidine acetyltransferase isoform X1 [KO:K14521] [EC:2.3.1.-]
108736872  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
108744621  ribonucleases P/MRP protein subunit POP1 isoform X1 [KO:K01164] [EC:3.1.26.5]
108737831  ribonuclease P protein subunit p38-like [KO:K14523] [EC:3.1.26.5]
108737930  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
108744572  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
108745020  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
108742136  RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
108732601  uncharacterized protein LOC108732601 [KO:K14570] [EC:3.1.-.-]
108734016  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
108734810  5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
108736408  5'-3' exoribonuclease 2 homolog isoform X1 [KO:K12619] [EC:3.1.13.-]
108741379  nucleolar GTP-binding protein 1 [KO:K06943]
108736155  nucleolar GTP-binding protein 2 [KO:K14537]
108744317  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
108744290  uncharacterized AAA domain-containing protein C16E9.10c isoform X1 [KO:K14571]
108743020  midasin isoform X1 [KO:K14572]
112906762  RNA-binding protein 28-like [KO:K14573]
108736363  RNA-binding protein 28-like [KO:K14573]
108736599  RNA-binding protein NOB1 [KO:K11883]
108737653  GTP-binding nuclear protein Ran [KO:K07936]
108743411  uncharacterized protein LOC108743411 [KO:K14290]
108743412  exportin-1 [KO:K14290]
108732789  60S ribosomal export protein NMD3 [KO:K07562]
108745140  nuclear RNA export factor 1 isoform X1 [KO:K14284]
108743059  uncharacterized protein LOC108743059 isoform X1 [KO:K14284]
108732837  nuclear RNA export factor 1 isoform X1 [KO:K14284]
108738323  NTF2-related export protein [KO:K14285]
108741461  eukaryotic translation initiation factor 6 [KO:K03264]
112905675  ribosome maturation protein SBDS [KO:K14574]
108741328  elongation factor-like GTPase 1 isoform X1 [KO:K14536] [EC:3.6.5.-]
112903922  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
108732518  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
108738496  spermatogenesis-associated protein 5 [KO:K14575]
108742130  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
108744497  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
108735542  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
112906843  small subunit ribosomal RNA [KO:K01979]
112906844  large subunit ribosomal RNA [KO:K01982]
112904362  5S ribosomal RNA [KO:K01981]
112905098  5S ribosomal RNA [KO:K01981]
112905608  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
apln03010  Ribosome
KO pathway
ko03008   
LinkDB

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