KEGG   PATHWAY: app00020
Entry
app00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Accumulibacter regalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
app00020  Citrate cycle (TCA cycle)
app00020

Module
app_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:app00020]
app_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:app00020]
app_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:app00020]
app_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:app00020]
app_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:app00020]
Other DBs
GO: 0006099
Organism
Candidatus Accumulibacter regalis [GN:app]
Gene
CAP2UW1_3105  citrate synthase I [KO:K01647] [EC:2.3.3.1]
CAP2UW1_2387  citrate synthase I [KO:K01647] [EC:2.3.3.1]
CAP2UW1_3882  citrate synthase I [KO:K01647] [EC:2.3.3.1]
CAP2UW1_3037  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CAP2UW1_2356  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CAP2UW1_0663  isocitrate/isopropylmalate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CAP2UW1_2388  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
CAP2UW1_2389  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CAP2UW1_1840  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CAP2UW1_2390  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CAP2UW1_4249  pyridine nucleotide-disulphide oxidoreductase dimerisation region [KO:K00382] [EC:1.8.1.4]
CAP2UW1_2583  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CAP2UW1_2584  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CAP2UW1_0657  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CAP2UW1_0656  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CAP2UW1_2384  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CAP2UW1_2385  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CAP2UW1_2382  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CAP2UW1_2383  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CAP2UW1_0926  fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CAP2UW1_0925  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
CAP2UW1_0924  fumarate reductase subunit C [KO:K00246]
CAP2UW1_0923  fumarate reductase D subunit [KO:K00247]
CAP2UW1_3757  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
CAP2UW1_1299  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CAP2UW1_2380  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CAP2UW1_1298  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CAP2UW1_0771  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CAP2UW1_1838  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
CAP2UW1_1839  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CAP2UW1_2511  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
CAP2UW1_2512  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
CAP2UW1_2510  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
app00010  Glycolysis / Gluconeogenesis
app00061  Fatty acid biosynthesis
app00071  Fatty acid degradation
app00190  Oxidative phosphorylation
app00220  Arginine biosynthesis
app00250  Alanine, aspartate and glutamate metabolism
app00280  Valine, leucine and isoleucine degradation
app00350  Tyrosine metabolism
app00470  D-Amino acid metabolism
app00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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