KEGG   PATHWAY: aroo00020
Entry
aroo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Amycolatopsis roodepoortensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aroo00020  Citrate cycle (TCA cycle)
aroo00020

Module
aroo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aroo00020]
aroo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aroo00020]
aroo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aroo00020]
aroo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aroo00020]
aroo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aroo00020]
Other DBs
GO: 0006099
Organism
Amycolatopsis roodepoortensis [GN:aroo]
Gene
NQK81_29385  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
NQK81_29565  citrate synthase [KO:K01647] [EC:2.3.3.1]
NQK81_03760  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NQK81_18695  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NQK81_32195  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
NQK81_14050  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQK81_37940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQK81_20085  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NQK81_20090  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NQK81_18890  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NQK81_44185  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NQK81_18895  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NQK81_44190  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NQK81_10650  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NQK81_18605  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NQK81_10645  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NQK81_18610  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NQK81_18595  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
NQK81_18600  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
NQK81_09605  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
NQK81_31600  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NQK81_00370  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NQK81_36125  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NQK81_25025  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
NQK81_37730  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NQK81_37935  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aroo00010  Glycolysis / Gluconeogenesis
aroo00053  Ascorbate and aldarate metabolism
aroo00061  Fatty acid biosynthesis
aroo00071  Fatty acid degradation
aroo00190  Oxidative phosphorylation
aroo00220  Arginine biosynthesis
aroo00250  Alanine, aspartate and glutamate metabolism
aroo00280  Valine, leucine and isoleucine degradation
aroo00350  Tyrosine metabolism
aroo00470  D-Amino acid metabolism
aroo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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