KEGG   PATHWAY: atri00630
Entry
atri00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Amaranthus tricolor (tampala)
Class
Metabolism; Carbohydrate metabolism
Pathway map
atri00630  Glyoxylate and dicarboxylate metabolism
atri00630

Module
atri_M00012  Glyoxylate cycle [PATH:atri00630]
atri_M00532  Photorespiration [PATH:atri00630]
atri_M00621  Glycine cleavage system [PATH:atri00630]
Other DBs
GO: 0046487 0043648
Organism
Amaranthus tricolor (tampala) [GN:atri]
Gene
130815130  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
130820453  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
130809185  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
130820244  acetate--CoA ligase CCL3 [KO:K01913] [EC:6.2.1.1 6.2.1.2]
130797673  malate synthase [KO:K01638] [EC:2.3.3.9]
130809460  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
130810481  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
130821375  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
130807353  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
130808194  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
130799129  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
130814494  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
130817461  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
130806894  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
130828951  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
130818253  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
130823623  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
130806058  acetyl-CoA acetyltransferase 2 [KO:K00626] [EC:2.3.1.9]
130806244  acetyl-CoA acetyltransferase 2-like [KO:K00626] [EC:2.3.1.9]
130808035  acetyl-CoA acetyltransferase 2-like [KO:K00626] [EC:2.3.1.9]
130818209  glycolate oxidase [KO:K11517] [EC:1.1.3.15]
130823105  glycolate oxidase 1-like [KO:K11517] [EC:1.1.3.15]
130823106  glycolate oxidase 1-like [KO:K11517] [EC:1.1.3.15]
130827594  peroxisomal (S)-2-hydroxyacid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
130828899  glycolate oxidase-like [KO:K11517] [EC:1.1.3.15]
130797417  catalase-2-like [KO:K03781] [EC:1.11.1.6]
130810457  catalase-like [KO:K03781] [EC:1.11.1.6]
130810458  catalase-2 [KO:K03781] [EC:1.11.1.6]
130803886  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
130798493  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
130813237  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
130805246  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
130798715  glycerate dehydrogenase HPR, peroxisomal-like [KO:K15893] [EC:1.1.1.29]
130824098  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
130797036  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
130818622  uncharacterized protein LOC130818622 [KO:K01601] [EC:4.1.1.39]
130820217  uncharacterized protein LOC130820217 [KO:K01601] [EC:4.1.1.39]
130820320  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
130797907  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
130826604  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
130826959  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
130827057  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
130827083  uncharacterized protein LOC130827083 [KO:K01601] [EC:4.1.1.39]
130811455  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
73918798  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
130802072  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
130802106  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
130815221  ribulose bisphosphate carboxylase large chain-like [KO:K01601] [EC:4.1.1.39]
130804681  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
130804684  ribulose bisphosphate carboxylase small subunit, chloroplastic 3 [KO:K01602] [EC:4.1.1.39]
130806805  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
130798702  ribulose bisphosphate carboxylase small subunit, chloroplastic 1-like [KO:K01602] [EC:4.1.1.39]
130802294  ribulose bisphosphate carboxylase small subunit, chloroplastic 3-like [KO:K01602] [EC:4.1.1.39]
130804303  ribulose bisphosphate carboxylase small subunit, chloroplastic 1 [KO:K01602] [EC:4.1.1.39]
130828152  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
130820856  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
130809168  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
130826142  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
130827301  ferredoxin-dependent glutamate synthase, chloroplastic-like isoform X1 [KO:K00284] [EC:1.4.7.1]
130805044  glutamine synthetase nodule isozyme-like [KO:K01915] [EC:6.3.1.2]
130825243  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
130825244  glutamine synthetase, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
130801806  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
130820661  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
130821133  serine hydroxymethyltransferase 7-like isoform X1 [KO:K00600] [EC:2.1.2.1]
130807399  serine hydroxymethyltransferase 3, chloroplastic-like [KO:K00600] [EC:2.1.2.1]
130808964  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
130825852  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
130811561  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
130814629  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
130804328  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
130797702  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
130804004  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
130814463  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
130824536  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
130811506  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
130804390  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
130804408  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
130800748  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
130800750  glycine cleavage system H protein, mitochondrial [KO:K02437]
130803092  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
130818421  D-glycerate 3-kinase, chloroplastic isoform X1 [KO:K15918] [EC:2.7.1.31]
130810634  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
130799587  formyltetrahydrofolate deformylase 2, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
130820796  uncharacterized protein LOC130820796 [KO:K01455] [EC:3.5.1.49]
130805266  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
atri00010  Glycolysis / Gluconeogenesis
atri00020  Citrate cycle (TCA cycle)
atri00030  Pentose phosphate pathway
atri00053  Ascorbate and aldarate metabolism
atri00071  Fatty acid degradation
atri00230  Purine metabolism
atri00250  Alanine, aspartate and glutamate metabolism
atri00260  Glycine, serine and threonine metabolism
atri00620  Pyruvate metabolism
atri00710  Carbon fixation by Calvin cycle
atri00750  Vitamin B6 metabolism
atri00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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