KEGG   PATHWAY: bah00020
Entry
bah00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus anthracis CDC 684
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bah00020  Citrate cycle (TCA cycle)
bah00020

Module
bah_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bah00020]
bah_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bah00020]
bah_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bah00020]
bah_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bah00020]
bah_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bah00020]
Other DBs
GO: 0006099
Organism
Bacillus anthracis CDC 684 [GN:bah]
Gene
BAMEG_2252  mmgD; citrate (Si)-synthase MmgD [KO:K01647] [EC:2.3.3.1]
BAMEG_4870  citZ; citrate synthase CitZ [KO:K01659] [EC:2.3.3.5]
BAMEG_0957  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BAMEG_4869  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BAMEG_3322  odhA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BAMEG_3323  odhB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BAMEG_1823  acoL; acetoin dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
BAMEG_4222  pdhD; pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BAMEG_4422  bfmbC; 3-methyl-2-oxobutanoate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
BAMEG_0721  putative pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BAMEG_0722  putative pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BAMEG_0659  sucD; succinate-CoA ligase (ADP-forming), alpha subunit [KO:K01902] [EC:6.2.1.5]
BAMEG_0658  sucC; succinate-CoA ligase (ADP-forming), beta subunit [KO:K01903] [EC:6.2.1.5]
BAMEG_2730  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BAMEG_4788  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BAMEG_4787  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BAMEG_4789  sdhC; succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
BAMEG_0494  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BAMEG_2822  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BAMEG_4868  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BAMEG_1631  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
BAMEG_4200  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BAMEG_5056  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BAMEG_4225  pdhA; pyruvate dehydrogenase complex E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BAMEG_4224  pdhB; pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BAMEG_1822  acoC; acetoin dehydrogenase, E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BAMEG_4223  pdhC; pyruvate dehydrogenase complex E2 component, dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bah00010  Glycolysis / Gluconeogenesis
bah00053  Ascorbate and aldarate metabolism
bah00061  Fatty acid biosynthesis
bah00071  Fatty acid degradation
bah00190  Oxidative phosphorylation
bah00220  Arginine biosynthesis
bah00250  Alanine, aspartate and glutamate metabolism
bah00280  Valine, leucine and isoleucine degradation
bah00350  Tyrosine metabolism
bah00470  D-Amino acid metabolism
bah00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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