KEGG   PATHWAY: bany03018
Entry
bany03018                   Pathway                                
Name
RNA degradation - Bicyclus anynana (squinting bush brown)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
bany03018  RNA degradation
bany03018

Other DBs
GO: 0006401
Organism
Bicyclus anynana (squinting bush brown) [GN:bany]
Gene
112045047  m7GpppX diphosphatase [KO:K12584] [EC:3.6.1.59]
112045393  exosome complex component CSL4 [KO:K07573]
112055414  exosome complex component RRP4 [KO:K03679]
112057901  exosome complex component RRP40 [KO:K03681]
112052204  exosome complex component RRP43 [KO:K12586]
112050454  exosome complex component MTR3 [KO:K12587]
112052509  exosome complex component RRP42 isoform X1 [KO:K12589]
112046843  exosome complex component RRP41 isoform X1 [KO:K11600]
112054628  exosome complex component RRP46 [KO:K12590]
112049278  exosome complex component RRP45 isoform X1 [KO:K03678]
112048496  exosome complex exonuclease RRP44 [KO:K12585] [EC:3.1.13.-]
112045724  exosome component 10 [KO:K12591] [EC:3.1.13.-]
112053363  M-phase phosphoprotein 6 [KO:K12593]
112049868  non-canonical poly(A) RNA polymerase protein Trf4-1 [KO:K03514] [EC:2.7.7.19]
112052164  exosome RNA helicase MTR4 isoform X1 [KO:K12598] [EC:5.6.2.6]
112047212  helicase SKI2W [KO:K12599] [EC:5.6.2.6]
112052268  tetratricopeptide repeat protein 37 [KO:K12600]
112056032  WD repeat-containing protein 61 [KO:K12602]
112050357  CCR4-NOT transcription complex subunit 6 isoform X1 [KO:K12603] [EC:3.1.13.4]
112043807  CCR4-NOT transcription complex subunit 1 isoform X1 [KO:K12604]
112047364  regulator of gene activity isoform X1 [KO:K12605]
112044045  uncharacterized protein DDB_G0288805 isoform X1 [KO:K10643] [EC:2.3.2.27]
112055969  CCR4-NOT transcription complex subunit 7-like isoform X1 [KO:K12581]
112051065  CCR4-NOT transcription complex subunit 7 [KO:K12581]
112055458  CCR4-NOT transcription complex subunit 9-like [KO:K12606]
112049921  CCR4-NOT transcription complex subunit 10 [KO:K12607]
112048987  ATP-dependent DNA/RNA helicase DHX36 [KO:K14442] [EC:5.6.2.6]
112049522  poly(A)-specific ribonuclease PARN [KO:K01148] [EC:3.1.13.4]
112052135  pre-piRNA 3'-exonuclease trimmer [KO:K01148] [EC:3.1.13.4]
112048602  protein Tob1 [KO:K14443]
112046904  polyadenylate-binding protein 1-A [KO:K13126]
112050597  PAN2-PAN3 deadenylation complex catalytic subunit PAN2 [KO:K12571] [EC:3.1.13.4]
112054302  PAN2-PAN3 deadenylation complex subunit PAN3 [KO:K12572]
112045024  mRNA-decapping enzyme 1B [KO:K12611] [EC:3.-.-.-]
112050140  m7GpppN-mRNA hydrolase [KO:K12613] [EC:3.6.1.62]
112044808  ATP-dependent RNA helicase me31b [KO:K12614] [EC:5.6.2.7]
112044836  enhancer of mRNA-decapping protein 3 [KO:K12615]
112049351  enhancer of mRNA-decapping protein 4 [KO:K12616]
112047611  putative uncharacterized protein DDB_G0287457 isoform X1 [KO:K12617]
112054779  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
112058116  U6 snRNA-associated Sm-like protein LSm1 [KO:K12620]
112042830  U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
112045252  U6 snRNA-associated Sm-like protein LSm3 [KO:K12622]
112046158  U6 snRNA-associated Sm-like protein LSm4 [KO:K12623]
112049065  U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
112043749  U6 snRNA-associated Sm-like protein LSm6 [KO:K12625]
112049506  U6 snRNA-associated Sm-like protein LSm7 [KO:K12626]
112051602  U6 snRNA-associated Sm-like protein LSm8 [KO:K12627]
112046182  enolase [KO:K01689] [EC:4.2.1.11]
112054364  polyribonucleotide nucleotidyltransferase 1, mitochondrial [KO:K00962] [EC:2.7.7.8]
112046902  ATP-dependent 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
112053457  heat shock 70 kDa protein cognate 5 [KO:K04043]
128199526  heat shock 70 kDa protein cognate 5-like isoform X1 [KO:K04043]
112047473  63 kDa chaperonin, mitochondrial-like [KO:K04077] [EC:5.6.1.7]
112051834  heat shock protein 60A [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
bany03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

DBGET integrated database retrieval system