KEGG   PATHWAY: bby00020
Entry
bby00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus bombysepticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bby00020  Citrate cycle (TCA cycle)
bby00020

Module
bby_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bby00020]
bby_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bby00020]
bby_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bby00020]
bby_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bby00020]
bby_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bby00020]
Other DBs
GO: 0006099
Organism
Bacillus bombysepticus [GN:bby]
Gene
CY96_10555  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
CY96_22125  citrate synthase [KO:K01659] [EC:2.3.3.5]
CY96_17065  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CY96_22120  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CY96_05485  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
CY96_05480  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CY96_12630  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CY96_19905  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CY96_18930  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CY96_17955  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CY96_17950  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CY96_18250  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
CY96_18255  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
CY96_08440  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CY96_21720  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
CY96_21715  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CY96_21725  succinate dehydrogenase [KO:K00241]
CY96_01490  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CY96_07730  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CY96_22115  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CY96_13640  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CY96_18815  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CY96_23000  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
CY96_18945  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
CY96_18940  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
CY96_12635  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
CY96_18935  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bby00010  Glycolysis / Gluconeogenesis
bby00053  Ascorbate and aldarate metabolism
bby00061  Fatty acid biosynthesis
bby00071  Fatty acid degradation
bby00190  Oxidative phosphorylation
bby00220  Arginine biosynthesis
bby00250  Alanine, aspartate and glutamate metabolism
bby00280  Valine, leucine and isoleucine degradation
bby00350  Tyrosine metabolism
bby00470  D-Amino acid metabolism
bby00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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