KEGG   PATHWAY: bck00020
Entry
bck00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Heyndrickxia coagulans 2-6
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bck00020  Citrate cycle (TCA cycle)
bck00020

Module
bck_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bck00020]
bck_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bck00020]
bck_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bck00020]
bck_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bck00020]
bck_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bck00020]
Other DBs
GO: 0006099
Organism
Heyndrickxia coagulans 2-6 [GN:bck]
Gene
BCO26_0545  mmgD; Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BCO26_1964  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
BCO26_1352  citB; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BCO26_1963  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BCO26_1275  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
BCO26_1276  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BCO26_1409  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCO26_0965  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCO26_1640  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCO26_1118  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BCO26_1117  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
BCO26_1911  sdhA; succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCO26_1910  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BCO26_1913  sdhC; succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
BCO26_0741  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BCO26_1962  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
BCO26_2932  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BCO26_2067  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BCO26_0962  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BCO26_0963  Transketolase central region [KO:K00162] [EC:1.2.4.1]
BCO26_1408  acoC; catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
BCO26_0964  pdhC; catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bck00010  Glycolysis / Gluconeogenesis
bck00053  Ascorbate and aldarate metabolism
bck00061  Fatty acid biosynthesis
bck00062  Fatty acid elongation
bck00071  Fatty acid degradation
bck00190  Oxidative phosphorylation
bck00220  Arginine biosynthesis
bck00250  Alanine, aspartate and glutamate metabolism
bck00280  Valine, leucine and isoleucine degradation
bck00350  Tyrosine metabolism
bck00470  D-Amino acid metabolism
bck00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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