KEGG   PATHWAY: bcz00020
Entry
bcz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus cereus E33L
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcz00020  Citrate cycle (TCA cycle)
bcz00020

Module
bcz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcz00020]
bcz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcz00020]
bcz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcz00020]
bcz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcz00020]
bcz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcz00020]
Other DBs
GO: 0006099
Organism
Bacillus cereus E33L [GN:bcz]
Gene
BCE33L2111  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
BCE33L4335  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
BCE33L3320  citB; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BCE33L4334  citC; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BCE33L1152  odhA; 2-oxoglutarate dehydrogenase, E1 component (alpha-ketoglutarate dehydrogenase) [KO:K00164] [EC:1.2.4.2]
BCE33L1151  odhB; 2-oxoglutarate dehydrogenase complex, E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
BCE33L3915  bfmbC; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCE33L2502  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCE33L3728  pdhD; pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCE33L3533  porA; pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BCE33L3532  porB; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BCE33L3594  sucD; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BCE33L3595  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
BCE33L1678  succinyl-CoA: coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
BCE33L4264  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCE33L4263  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BCE33L4265  sdhC; succinate dehydrogenase cytochrome B-558 subunit [KO:K00241]
BCE33L0397  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BCE33L1587  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BCE33L4333  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCE33L2692  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BCE33L3707  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BCE33L4518  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BCE33L3731  pdhA; pyruvate dehydrogenase complex E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BCE33L3730  pdhB; pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BCE33L2503  acoC; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
BCE33L3729  pdhC; pyruvate dehydrogenase complex E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcz00010  Glycolysis / Gluconeogenesis
bcz00053  Ascorbate and aldarate metabolism
bcz00061  Fatty acid biosynthesis
bcz00071  Fatty acid degradation
bcz00190  Oxidative phosphorylation
bcz00220  Arginine biosynthesis
bcz00250  Alanine, aspartate and glutamate metabolism
bcz00280  Valine, leucine and isoleucine degradation
bcz00350  Tyrosine metabolism
bcz00470  D-Amino acid metabolism
bcz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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