KEGG   PATHWAY: bei00020
Entry
bei00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Barrientosiimonas endolithica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bei00020  Citrate cycle (TCA cycle)
bei00020

Module
bei_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bei00020]
bei_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bei00020]
bei_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bei00020]
bei_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bei00020]
bei_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bei00020]
Other DBs
GO: 0006099
Organism
Barrientosiimonas endolithica [GN:bei]
Gene
GCM100_07520  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
GCM100_13360  citrate synthase [KO:K01647] [EC:2.3.3.1]
GCM100_13380  citrate synthase [KO:K01647] [EC:2.3.3.1]
GCM100_16890  citrate synthase [KO:K01659] [EC:2.3.3.5]
GCM100_14810  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GCM100_27260  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
GCM100_08650  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
GCM100_13610  pdhD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GCM100_20210  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GCM100_04740  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GCM100_04730  hypothetical protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GCM100_27550  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
GCM100_27560  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
GCM100_26830  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GCM100_26820  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
GCM100_26840  succinate dehydrogenase [KO:K00241]
GCM100_06840  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
GCM100_28320  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
GCM100_27450  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GCM100_01010  pckA; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
GCM100_20700  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
GCM100_13600  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bei00010  Glycolysis / Gluconeogenesis
bei00053  Ascorbate and aldarate metabolism
bei00061  Fatty acid biosynthesis
bei00071  Fatty acid degradation
bei00190  Oxidative phosphorylation
bei00220  Arginine biosynthesis
bei00250  Alanine, aspartate and glutamate metabolism
bei00280  Valine, leucine and isoleucine degradation
bei00350  Tyrosine metabolism
bei00470  D-Amino acid metabolism
bei00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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