KEGG   PATHWAY: bhz00630
Entry
bhz00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bordetella hinzii
Class
Metabolism; Carbohydrate metabolism
Pathway map
bhz00630  Glyoxylate and dicarboxylate metabolism
bhz00630

Module
bhz_M00012  Glyoxylate cycle [PATH:bhz00630]
bhz_M00621  Glycine cleavage system [PATH:bhz00630]
Other DBs
GO: 0046487 0043648
Organism
Bordetella hinzii [GN:bhz]
Gene
ACR54_01408  aceA; Isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
ACR54_03249  acsA_2; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
ACR54_03273  acsA_3; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
ACR54_02516  acsA_1; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
ACR54_00117  glcB; Malate synthase G [KO:K01638] [EC:2.3.3.9]
ACR54_03240  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACR54_01615  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
ACR54_03233  gltA_2; Citrate synthase [KO:K01647] [EC:2.3.3.1]
ACR54_03242  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ACR54_00989  acnA_1; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACR54_01725  acnA_3; Aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACR54_03548  citB_2; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACR54_02439  citB_1; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACR54_03545  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ACR54_01255  putative acetyl-CoA acyltransferase [KO:K00626] [EC:2.3.1.9]
ACR54_03788  fadA_4; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
ACR54_03501  bktB; Beta-ketothiolase BktB [KO:K00626] [EC:2.3.1.9]
ACR54_02367  fadA_3; Putative acyltransferase [KO:K00626] [EC:2.3.1.9]
ACR54_04562  thlA; Acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
ACR54_02418  thiolase [KO:K00626] [EC:2.3.1.9]
ACR54_03198  phbB_2; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
ACR54_02561  phbB_1; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
ACR54_01126  phaJ_1; (R)-specific enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
ACR54_01127  bifunctional enoyl-CoA hydratase/phosphate acetyltransferase [KO:K17865] [EC:4.2.1.55]
ACR54_02908  putative FAD-linked oxidoreductase [KO:K00104] [EC:1.1.99.14]
ACR54_02907  putative FAD-linked oxidoreductase [KO:K11472] [EC:1.1.99.14]
ACR54_02906  lutA; Lactate utilization protein A [KO:K11473] [EC:1.1.99.14]
ACR54_00883  katB; Catalase precursor [KO:K03781] [EC:1.11.1.6]
ACR54_01064  ghrB_3; Glyoxylate/hydroxypyruvate reductase B [KO:K00015] [EC:1.1.1.26]
ACR54_01166  ghrA_2; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
ACR54_00659  ghrA_1; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
ACR54_02962  ghrA_3; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
ACR54_00254  gph_1; Phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
ACR54_03310  cbbZC_1; Phosphoglycolate phosphatase, chromosomal [KO:K01091] [EC:3.1.3.18]
ACR54_04343  cbbZC_2; Phosphoglycolate phosphatase, chromosomal [KO:K01091] [EC:3.1.3.18]
ACR54_00894  Soluble hydrogenase 42 kDa subunit [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
ACR54_00474  glyA2_1; Serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
ACR54_04068  glyA2_2; Serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
ACR54_00698  gcvP; Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
ACR54_00696  gcvT; Aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
ACR54_03708  lpd_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACR54_02184  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACR54_03216  lpd_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACR54_02709  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACR54_00697  gcvH; Glycine cleavage system H protein [KO:K02437]
ACR54_03852  glxK; Glycerate kinase [KO:K00865] [EC:2.7.1.165]
ACR54_02950  dmlA; D-malate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ACR54_03778  Tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
ACR54_03794  kdgA; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
ACR54_01312  NADH-dependent formate dehydrogenase delta subunit FdsD [KO:K00126] [EC:1.17.1.9]
ACR54_01314  Putative formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
ACR54_04361  fdoG_1; Formate dehydrogenase-O major subunit precursor [KO:K00123] [EC:1.17.1.9]
ACR54_04362  fdoG_2; Formate dehydrogenase-O major subunit precursor [KO:K00123] [EC:1.17.1.9]
ACR54_01315  hndC; NADP-reducing hydrogenase subunit HndC [KO:K00124]
ACR54_04360  fdoH; Formate dehydrogenase-O iron-sulfur subunit [KO:K00124]
ACR54_01316  nqo2_1; NADH-quinone oxidoreductase subunit 2 [KO:K00127]
ACR54_04359  fdoI; Formate dehydrogenase, cytochrome b556(fdo) subunit [KO:K00127]
ACR54_00831  nlhH_2; Carboxylesterase NlhH [KO:K01432] [EC:3.5.1.9]
ACR54_00832  Carboxylesterase family protein [KO:K01432] [EC:3.5.1.9]
ACR54_04153  nlhH_3; Carboxylesterase NlhH [KO:K01432] [EC:3.5.1.9]
ACR54_01357  kynB; Kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
ACR54_03813  purU; Formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
ACR54_03035  fmdA; Formamidase [KO:K01455] [EC:3.5.1.49]
ACR54_00611  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bhz00010  Glycolysis / Gluconeogenesis
bhz00020  Citrate cycle (TCA cycle)
bhz00030  Pentose phosphate pathway
bhz00053  Ascorbate and aldarate metabolism
bhz00071  Fatty acid degradation
bhz00230  Purine metabolism
bhz00250  Alanine, aspartate and glutamate metabolism
bhz00260  Glycine, serine and threonine metabolism
bhz00620  Pyruvate metabolism
bhz00710  Carbon fixation by Calvin cycle
bhz00750  Vitamin B6 metabolism
bhz00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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