KEGG   PATHWAY: bhz00020
Entry
bhz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bordetella hinzii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bhz00020  Citrate cycle (TCA cycle)
bhz00020

Module
bhz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bhz00020]
bhz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bhz00020]
bhz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bhz00020]
bhz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bhz00020]
bhz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bhz00020]
Other DBs
GO: 0006099
Organism
Bordetella hinzii [GN:bhz]
Gene
ACR54_01615  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
ACR54_03233  gltA_2; Citrate synthase [KO:K01647] [EC:2.3.3.1]
ACR54_03242  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ACR54_00989  acnA_1; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACR54_01725  acnA_3; Aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACR54_03548  citB_2; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACR54_02439  citB_1; Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACR54_03545  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ACR54_01024  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ACR54_02330  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ACR54_03218  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ACR54_03217  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ACR54_03708  lpd_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACR54_02184  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACR54_03216  lpd_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACR54_02709  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACR54_01759  sucD_2; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
ACR54_01758  sucC_1; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
ACR54_03535  cat1_1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
ACR54_03236  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ACR54_02400  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ACR54_03235  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ACR54_02399  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ACR54_03238  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
ACR54_03237  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
ACR54_03836  fumB_2; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
ACR54_01704  ttdA; L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
ACR54_01703  fumB_1; Fumarate hydratase class I, anaerobic [KO:K01678] [EC:4.2.1.2]
ACR54_03820  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ACR54_03240  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACR54_02099  pckG; Phosphoenolpyruvate carboxykinase GTP [KO:K01596] [EC:4.1.1.32]
ACR54_03220  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ACR54_02711  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ACR54_03710  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ACR54_02710  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bhz00010  Glycolysis / Gluconeogenesis
bhz00053  Ascorbate and aldarate metabolism
bhz00061  Fatty acid biosynthesis
bhz00071  Fatty acid degradation
bhz00190  Oxidative phosphorylation
bhz00220  Arginine biosynthesis
bhz00250  Alanine, aspartate and glutamate metabolism
bhz00280  Valine, leucine and isoleucine degradation
bhz00350  Tyrosine metabolism
bhz00470  D-Amino acid metabolism
bhz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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