KEGG   PATHWAY: bpx00630
Entry
bpx00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Paraburkholderia phenoliruptrix
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpx00630  Glyoxylate and dicarboxylate metabolism
bpx00630

Module
bpx_M00012  Glyoxylate cycle [PATH:bpx00630]
bpx_M00621  Glycine cleavage system [PATH:bpx00630]
Other DBs
GO: 0046487 0043648
Organism
Paraburkholderia phenoliruptrix [GN:bpx]
Gene
BUPH_02767  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
BUPH_01685  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
BUPH_00398  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
BUPH_02156  malate synthase [KO:K01638] [EC:2.3.3.9]
BUPH_02771  malate synthase [KO:K01638] [EC:2.3.3.9]
BUPH_01453  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BUPH_03364  citrate synthase [KO:K01647] [EC:2.3.3.1]
BUPH_01460  citrate synthase [KO:K01647] [EC:2.3.3.1]
BUPH_04494  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BUPH_01447  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BUPH_02202  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BUPH_04089  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BUPH_02481  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BUPH_02258  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BUPH_02263  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BUPH_01938  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
BUPH_00045  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
BUPH_08244  phbB; Acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
BUPH_02262  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
BUPH_04320  glycolate oxidase [KO:K00104] [EC:1.1.99.14]
BUPH_04319  glycolate oxidase FAD binding protein subunit [KO:K11472] [EC:1.1.99.14]
BUPH_04318  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
BUPH_04313  catalase [KO:K03781] [EC:1.11.1.6]
BUPH_00979  gyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BUPH_05938  gyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BUPH_06636  ghrA; Glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
BUPH_02021  gluconate 2-dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BUPH_03138  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
BUPH_03130  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BUPH_06229  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BUPH_00570  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
BUPH_00547  ribulose-bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
BUPH_00546  ribulose-bisphosphate carboxylase small chain [KO:K01602] [EC:4.1.1.39]
BUPH_01368  alanine-glyoxylate transaminase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
BUPH_00621  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BUPH_04746  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BUPH_02896  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BUPH_02127  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
BUPH_00029  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BUPH_04362  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
BUPH_03826  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
BUPH_03824  aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
BUPH_02878  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BUPH_01908  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BUPH_03825  glycine cleavage system H protein [KO:K02437]
BUPH_02327  tartronate-semialdehyde synthase [KO:K01608] [EC:4.1.1.47]
BUPH_02328  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
BUPH_06166  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
BUPH_02329  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
BUPH_02224  glycerate kinase [KO:K00865] [EC:2.7.1.165]
BUPH_02150  lactaldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
BUPH_05830  tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BUPH_04481  tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BUPH_05942  tartrate dehydrogenase/decarboxylase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
BUPH_03540  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BUPH_03226  formate dehydrogenase, delta subunit [KO:K00126] [EC:1.17.1.9]
BUPH_03225  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
BUPH_03224  formate dehydrogenase, beta subunit [KO:K00124]
BUPH_03223  formate dehydrogenase, gamma subunit [KO:K00127]
BUPH_03405  arylformamidase [KO:K07130] [EC:3.5.1.9]
BUPH_00039  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BUPH_04219  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
BUPH_01801  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
BUPH_08412  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
BUPH_08429  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bpx00010  Glycolysis / Gluconeogenesis
bpx00020  Citrate cycle (TCA cycle)
bpx00030  Pentose phosphate pathway
bpx00053  Ascorbate and aldarate metabolism
bpx00071  Fatty acid degradation
bpx00230  Purine metabolism
bpx00250  Alanine, aspartate and glutamate metabolism
bpx00260  Glycine, serine and threonine metabolism
bpx00620  Pyruvate metabolism
bpx00710  Carbon fixation by Calvin cycle
bpx00750  Vitamin B6 metabolism
bpx00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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