KEGG   PATHWAY: bra00020
Entry
bra00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bradyrhizobium sp. ORS 278
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bra00020  Citrate cycle (TCA cycle)
bra00020

Module
bra_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bra00020]
bra_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bra00020]
bra_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bra00020]
bra_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bra00020]
bra_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bra00020]
Other DBs
GO: 0006099
Organism
Bradyrhizobium sp. ORS 278 [GN:bra]
Gene
BRADO4126  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BRADO0613  Putative citrate synthase [KO:K01647] [EC:2.3.3.1]
BRADO0614  Putative citrate synthase [KO:K01647] [EC:2.3.3.1]
BRADO0393  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BRADO2759  icd; isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) [KO:K00031] [EC:1.1.1.42]
BRADO0406  sucA; 2-oxoglutarate decarboxylase, component of the 2-oxoglutarate dehydrogenase complex, thiamin-binding [KO:K00164] [EC:1.2.4.2]
BRADO0407  sucB; Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2); acid-inducible [KO:K00658] [EC:2.3.1.61]
BRADO4083  lpD; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BRADO0409  lpd; dihydrolipoamide dehydrogenase, FAD/NAD(P)-binding, component of the 2-oxoglutarate dehydrogenase and the pyruvate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
BRADO5801  putative 2-oxoglutarate synthase subunit A (korA-like) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BRADO5802  putative 2-oxoglutarate synthase subunit B (korB-like) [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BRADO0405  sucD; succinyl-CoA synthetase, alpha subunit, NAD(P)-binding [KO:K01902] [EC:6.2.1.5]
BRADO0404  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
BRADO2714  Putative acetyl-CoA hydrolase/transferase family protein; putative Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
BRADO0234  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BRADO0235  sdhB; succinate dehydrogenase, Fe-S protein [KO:K00240] [EC:1.3.5.1]
BRADO0232  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
BRADO0233  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BRADO5016  fumA; fumarase A (fumarate hydratase class I) [KO:K01676] [EC:4.2.1.2]
BRADO5584  fumC; Fumarate hydratase class II (Fumarase C) [KO:K01679] [EC:4.2.1.2]
BRADO0403  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BRADO0741  pckA; Phosphoenolpyruvate carboxykinase [ATP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) [KO:K01610] [EC:4.1.1.49]
BRADO2485  putative dehydrogenase [KO:K00163] [EC:1.2.4.1]
BRADO4087  pdhA; Pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BRADO4086  pdhB; Pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BRADO4084  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bra00010  Glycolysis / Gluconeogenesis
bra00053  Ascorbate and aldarate metabolism
bra00061  Fatty acid biosynthesis
bra00071  Fatty acid degradation
bra00190  Oxidative phosphorylation
bra00220  Arginine biosynthesis
bra00250  Alanine, aspartate and glutamate metabolism
bra00280  Valine, leucine and isoleucine degradation
bra00350  Tyrosine metabolism
bra00470  D-Amino acid metabolism
bra00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system