KEGG   PATHWAY: brk00020
Entry
brk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bradyrhizobium sp. SK17
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
brk00020  Citrate cycle (TCA cycle)
brk00020

Module
brk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:brk00020]
brk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:brk00020]
brk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:brk00020]
brk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:brk00020]
brk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:brk00020]
Other DBs
GO: 0006099
Organism
Bradyrhizobium sp. SK17 [GN:brk]
Gene
CWS35_25815  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CWS35_04135  citrate synthase [KO:K01647] [EC:2.3.3.1]
CWS35_04140  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CWS35_07110  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CWS35_30775  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CWS35_07175  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CWS35_07180  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CWS35_07190  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CWS35_25555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CWS35_34365  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CWS35_34370  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CWS35_07170  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CWS35_07160  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CWS35_06840  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CWS35_06835  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CWS35_06850  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CWS35_06845  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CWS35_30975  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CWS35_33250  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CWS35_07155  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CWS35_09915  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CWS35_17350  transketolase [KO:K00163] [EC:1.2.4.1]
CWS35_25575  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CWS35_25570  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CWS35_25560  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
brk00010  Glycolysis / Gluconeogenesis
brk00053  Ascorbate and aldarate metabolism
brk00061  Fatty acid biosynthesis
brk00071  Fatty acid degradation
brk00190  Oxidative phosphorylation
brk00220  Arginine biosynthesis
brk00250  Alanine, aspartate and glutamate metabolism
brk00280  Valine, leucine and isoleucine degradation
brk00350  Tyrosine metabolism
brk00470  D-Amino acid metabolism
brk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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