KEGG   PATHWAY: brw00020
Entry
brw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brevibacillus sp. 7WMA2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
brw00020  Citrate cycle (TCA cycle)
brw00020

Module
brw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:brw00020]
brw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:brw00020]
brw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:brw00020]
brw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:brw00020]
brw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:brw00020]
Other DBs
GO: 0006099
Organism
Brevibacillus sp. 7WMA2 [GN:brw]
Gene
GOP56_17330  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
GOP56_17895  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
GOP56_20555  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
GOP56_12345  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GOP56_20560  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GOP56_05865  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GOP56_05860  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GOP56_01715  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GOP56_02400  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GOP56_07045  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GOP56_08170  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GOP56_08165  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GOP56_05850  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GOP56_08700  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GOP56_05855  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GOP56_08705  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GOP56_21735  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GOP56_21740  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GOP56_21730  succinate dehydrogenase [KO:K00241]
GOP56_00365  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GOP56_20565  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GOP56_15685  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GOP56_11895  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GOP56_13355  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GOP56_07060  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GOP56_07055  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
GOP56_02395  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
GOP56_07050  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
GOP56_20985  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
GOP56_20980  4Fe-4S dicluster domain-containing protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
brw00010  Glycolysis / Gluconeogenesis
brw00053  Ascorbate and aldarate metabolism
brw00061  Fatty acid biosynthesis
brw00071  Fatty acid degradation
brw00190  Oxidative phosphorylation
brw00220  Arginine biosynthesis
brw00250  Alanine, aspartate and glutamate metabolism
brw00280  Valine, leucine and isoleucine degradation
brw00350  Tyrosine metabolism
brw00470  D-Amino acid metabolism
brw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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