KEGG   PATHWAY: brx00020
Entry
brx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brachybacterium sp. P6-10-X1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
brx00020  Citrate cycle (TCA cycle)
brx00020

Module
brx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:brx00020]
brx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:brx00020]
brx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:brx00020]
brx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:brx00020]
Other DBs
GO: 0006099
Organism
Brachybacterium sp. P6-10-X1 [GN:brx]
Gene
BH708_19290  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BH708_00400  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BH708_01740  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BH708_07220  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BH708_05725  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
BH708_03655  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BH708_18355  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BH708_18350  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BH708_06880  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BH708_12605  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
BH708_06885  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BH708_06870  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BH708_06875  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BH708_07975  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
BH708_14835  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BH708_00915  malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
BH708_03805  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BH708_06005  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BH708_06010  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
BH708_03660  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
BH708_06015  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
brx00010  Glycolysis / Gluconeogenesis
brx00053  Ascorbate and aldarate metabolism
brx00061  Fatty acid biosynthesis
brx00071  Fatty acid degradation
brx00190  Oxidative phosphorylation
brx00220  Arginine biosynthesis
brx00250  Alanine, aspartate and glutamate metabolism
brx00280  Valine, leucine and isoleucine degradation
brx00350  Tyrosine metabolism
brx00470  D-Amino acid metabolism
brx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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