KEGG   PATHWAY: bthr00020
Entry
bthr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus thuringiensis serovar kurstaki YBT-1520
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bthr00020  Citrate cycle (TCA cycle)
bthr00020

Module
bthr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bthr00020]
bthr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bthr00020]
bthr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bthr00020]
bthr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bthr00020]
bthr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bthr00020]
Other DBs
GO: 0006099
Organism
Bacillus thuringiensis serovar kurstaki YBT-1520 [GN:bthr]
Gene
YBT1520_12600  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
YBT1520_24270  citrate synthase [KO:K01659] [EC:2.3.3.5]
YBT1520_19220  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
YBT1520_24265  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
YBT1520_07400  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
YBT1520_07395  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
YBT1520_21080  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YBT1520_15880  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YBT1520_22140  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YBT1520_20060  2-oxoglutarate synthase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
YBT1520_20055  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
YBT1520_20370  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
YBT1520_20375  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
YBT1520_10150  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
YBT1520_23860  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
YBT1520_23855  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
YBT1520_23865  succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
YBT1520_02730  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
YBT1520_09735  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
YBT1520_24260  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YBT1520_14825  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
YBT1520_20970  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
YBT1520_25160  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
YBT1520_21095  pyruvate dehydrogenase complex E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
YBT1520_21090  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
YBT1520_15875  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
YBT1520_21085  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bthr00010  Glycolysis / Gluconeogenesis
bthr00053  Ascorbate and aldarate metabolism
bthr00061  Fatty acid biosynthesis
bthr00071  Fatty acid degradation
bthr00190  Oxidative phosphorylation
bthr00220  Arginine biosynthesis
bthr00250  Alanine, aspartate and glutamate metabolism
bthr00280  Valine, leucine and isoleucine degradation
bthr00350  Tyrosine metabolism
bthr00470  D-Amino acid metabolism
bthr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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