KEGG   PATHWAY: bvr00020
Entry
bvr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Blastochloris viridis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bvr00020  Citrate cycle (TCA cycle)
bvr00020

Module
bvr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bvr00020]
bvr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bvr00020]
bvr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bvr00020]
bvr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bvr00020]
bvr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bvr00020]
Other DBs
GO: 0006099
Organism
Blastochloris viridis [GN:bvr]
Gene
BVIR_2423  Citrate synthase [KO:K01647] [EC:2.3.3.1]
BVIR_2103  2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
BVIR_6  Aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BVIR_1017  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BVIR_2645  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BVIR_2644  Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BVIR_1925  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BVIR_2641  Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
BVIR_456  2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BVIR_455  2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BVIR_454  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
BVIR_2646  Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BVIR_2647  Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BVIR_1907  Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
BVIR_2656  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BVIR_2654  Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BVIR_2658  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
BVIR_2657  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00242]
BVIR_2961  Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BVIR_2962  Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
BVIR_2963  Fumarate reductase subunit C [KO:K00246]
BVIR_2964  Fumarate reductase subunit D [KO:K00247]
BVIR_2912  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BVIR_2648  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BVIR_1533  2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
BVIR_3067  Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
BVIR_1928  Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
BVIR_1927  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BVIR_1926  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BVIR_2292  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bvr00010  Glycolysis / Gluconeogenesis
bvr00053  Ascorbate and aldarate metabolism
bvr00061  Fatty acid biosynthesis
bvr00071  Fatty acid degradation
bvr00190  Oxidative phosphorylation
bvr00220  Arginine biosynthesis
bvr00250  Alanine, aspartate and glutamate metabolism
bvr00280  Valine, leucine and isoleucine degradation
bvr00350  Tyrosine metabolism
bvr00470  D-Amino acid metabolism
bvr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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