KEGG   PATHWAY: caba00020
Entry
caba00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Caballeronia sp. SBC2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
caba00020  Citrate cycle (TCA cycle)
caba00020

Module
caba_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:caba00020]
caba_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:caba00020]
caba_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:caba00020]
caba_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:caba00020]
caba_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:caba00020]
Other DBs
GO: 0006099
Organism
Caballeronia sp. SBC2 [GN:caba]
Gene
SBC2_42110  hypothetical protein [KO:K01647] [EC:2.3.3.1]
SBC2_55750  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
SBC2_61520  citA_2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
SBC2_79020  hypothetical protein [KO:K01647] [EC:2.3.3.1]
SBC2_36960  acnA_1; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
SBC2_55630  acnA_2; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
SBC2_69270  citB; Aconitate/2-methylaconitate hydratase [KO:K01681] [EC:4.2.1.3]
SBC2_46210  icd_2; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SBC2_07250  icd_1; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SBC2_22220  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
SBC2_22210  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
SBC2_65220  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SBC2_13150  sthA; Soluble pyridine nucleotide transhydrogenase [KO:K00382] [EC:1.8.1.4]
SBC2_22200  lpdG; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SBC2_06330  sucD_1; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
SBC2_06320  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
SBC2_36810  cat1; Succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
SBC2_55720  sdhA_2; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SBC2_62810  sdhA_3; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SBC2_75240  sdhA_4; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SBC2_75270  FAD binding domain protein [KO:K00239] [EC:1.3.5.1]
SBC2_55730  sdhB_1; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SBC2_72520  sdhB_2; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SBC2_75250  sdhB_3; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SBC2_55700  sdhC_1; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
SBC2_75220  sdhC_2; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
SBC2_55710  sdhD_1; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
SBC2_62800  sdhD_2; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
SBC2_75230  sdhD_3; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
SBC2_17480  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SBC2_17430  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
SBC2_17440  hypothetical protein [KO:K00246]
SBC2_17450  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00247]
SBC2_23640  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
SBC2_17460  ttdA; L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
SBC2_26380  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
SBC2_55680  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SBC2_00390  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
SBC2_13130  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SBC2_21820  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SBC2_13140  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
caba00010  Glycolysis / Gluconeogenesis
caba00053  Ascorbate and aldarate metabolism
caba00061  Fatty acid biosynthesis
caba00071  Fatty acid degradation
caba00190  Oxidative phosphorylation
caba00220  Arginine biosynthesis
caba00250  Alanine, aspartate and glutamate metabolism
caba00280  Valine, leucine and isoleucine degradation
caba00350  Tyrosine metabolism
caba00470  D-Amino acid metabolism
caba00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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