KEGG   PATHWAY: cbaa00020
Entry
cbaa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Serpentinimonas raichei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cbaa00020  Citrate cycle (TCA cycle)
cbaa00020

Module
cbaa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cbaa00020]
cbaa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cbaa00020]
cbaa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cbaa00020]
cbaa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cbaa00020]
cbaa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cbaa00020]
Other DBs
GO: 0006099
Organism
Serpentinimonas raichei [GN:cbaa]
Gene
SRAA_1691  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SRAA_1681  acnB; aconitase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SRAA_0781  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SRAA_1873  isocitrate/isopropylmalate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SRAA_0980  sucA; 2-oxoglutarate dehydrogenase complex, dehydrogenase E1 component, and related enzymes [KO:K00164] [EC:1.2.4.2]
SRAA_0981  sucB; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase E2 component, and related enzymes [KO:K00658] [EC:2.3.1.61]
SRAA_1085  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component, and related enzymes [KO:K00382] [EC:1.8.1.4]
SRAA_0982  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component, and related enzymes [KO:K00382] [EC:1.8.1.4]
SRAA_1836  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SRAA_1835  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
SRAA_1688  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SRAA_1689  sdhB; succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
SRAA_1686  succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
SRAA_1687  succinate dehydrogenase, hydrophobic anchor subunit [KO:K00242]
SRAA_1170  tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [KO:K01676] [EC:4.2.1.2]
SRAA_1684  mdh; malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SRAA_2142  pckA; phosphoenolpyruvate carboxykinase GTP [KO:K01596] [EC:4.1.1.32]
SRAA_1087  aceE; pyruvate dehydrogenase complex, dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SRAA_1086  pdhC; pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase E2 component, and related enzymes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cbaa00010  Glycolysis / Gluconeogenesis
cbaa00061  Fatty acid biosynthesis
cbaa00071  Fatty acid degradation
cbaa00190  Oxidative phosphorylation
cbaa00220  Arginine biosynthesis
cbaa00250  Alanine, aspartate and glutamate metabolism
cbaa00280  Valine, leucine and isoleucine degradation
cbaa00350  Tyrosine metabolism
cbaa00470  D-Amino acid metabolism
cbaa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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