KEGG   PATHWAY: ccx00020
Entry
ccx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corallococcus coralloides
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccx00020  Citrate cycle (TCA cycle)
ccx00020

Module
ccx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ccx00020]
ccx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccx00020]
ccx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ccx00020]
ccx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccx00020]
Other DBs
GO: 0006099
Organism
Corallococcus coralloides [GN:ccx]
Gene
COCOR_05901  citZ1; citrate synthase [KO:K01647] [EC:2.3.3.1]
COCOR_04524  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
COCOR_07598  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
COCOR_01253  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
COCOR_04503  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
COCOR_06955  leuB2; putative isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
COCOR_06569  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
COCOR_06570  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
COCOR_03717  lpdA; alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
COCOR_04498  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
COCOR_04499  sucC; succinyl-CoA synthase subunit beta [KO:K01903] [EC:6.2.1.5]
COCOR_04501  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
COCOR_04500  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
COCOR_01013  sdhC; succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
COCOR_02760  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
COCOR_07028  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
COCOR_04502  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
COCOR_01172  pckG; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
COCOR_05378  pdhA; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit alpha [KO:K00161] [EC:1.2.4.1]
COCOR_05377  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
COCOR_05376  pdhC; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
COCOR_03727  pdhC1; alpha keto acid dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccx00010  Glycolysis / Gluconeogenesis
ccx00053  Ascorbate and aldarate metabolism
ccx00061  Fatty acid biosynthesis
ccx00071  Fatty acid degradation
ccx00190  Oxidative phosphorylation
ccx00220  Arginine biosynthesis
ccx00250  Alanine, aspartate and glutamate metabolism
ccx00280  Valine, leucine and isoleucine degradation
ccx00350  Tyrosine metabolism
ccx00470  D-Amino acid metabolism
ccx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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